Table 1.
Repeat constructs analyzed in this study
| Construct | %H | #F | Plasmid | Strain “A” | Replica crosses | P value | Sample size | Mean | SEM | Median | MAD |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 802 bp | 100 | N/A | pEAG115A | T103.3 | 1 | N/A | 24 | 296.2 | 14.2 | 304.5 | 48.5 |
| 524 bp | 100 | N/A | pEAG115B | T193.3 | 1 | N/A | 24 | 123.2 | 7.2 | 117.0 | 10.0 |
| 460 bp | 100 | N/A | pEAG115D | T194.2 | 1 | N/A | 24 | 70.8 | 7.0 | 72.5 | 20.5 |
| 400 bp | 100 | N/A | pEAG115E | T196.5 | 1 | N/A | 24 | 35.5 | 4.6 | 35.5 | 17.0 |
| 337 bp | 100 | N/A | pEAG115C | T187.3 | 1 | N/A | 24 | 18.6 | 2.9 | 17.0 | 9.5 |
| 279 bp | 100 | N/A | pEAG115F | T198.3 | 1 | N/A | 24 | 9.0 | 1.9 | 6.0 | 5.0 |
| 220 bp | 100 | N/A | pEAG115G | T199.5 | 1 | N/A | 24 | 2.5 | 1.0 | 1.0 | 1.0 |
| 155 bp | 100 | N/A | pEAG115H | T200.3 | 2 | 1.00 | 48 | 0.1 | 0.1 | 0.0 | 0.0 |
| Ref | 100 | N/A | pEAG186A | T207.3 | 1 | N/A | 30 | 68.6 | 4.8 | 72.5 | 17.5 |
| A[19] | N/A | N/A | pEAG186C | T209.1 | 1 | N/A | 30 | 64.2 | 4.0 | 62.5 | 13.5 |
| N[19] | N/A | N/A | pEAG186D | T210.11 | 1 | N/A | 30 | 79.6 | 4.8 | 83.0 | 23.5 |
| CA[11] | N/A | N/A | pEAG186Q | T251.1 | 1 | N/A | 30 | 74.7 | 6.5 | 74.5 | 32.0 |
| 9H-2N | 82 | 7 | pEAG186E | T211.1 | 1 | N/A | 30 | 57.3 | 5.4 | 56.5 | 21.5 |
| 8H-3N | 73 | 6 | pEAG186G | T213.1 | 1 | N/A | 30 | 46.2 | 3.8 | 45.5 | 20.5 |
| 7H-4N | 64 | 5 | pEAG186H | T214.5 | 1 | N/A | 30 | 44.3 | 3.5 | 42.0 | 13.0 |
| 6H-5N | 55 | 4 | pEAG186I | T215.13 | 2 | 0.17 | 60 | 42.8 | 3.0 | 37.5 | 11.5 |
| 5H-6N | 45 | 3 | pEAG186J | T216.7 | 2 | 0.38 | 60 | 27.7 | 2.4 | 25.0 | 12.5 |
| 4H-7N | 36 | 2 | pEAG186K | T221.18 | 2 | 0.67 | 60 | 24.1 | 2.3 | 21.0 | 12.5 |
| 4H-7N′ | 36 | 2 | pEAG200D | T254.4 | 2 | 0.81 | 60 | 20.7 | 2.4 | 16.0 | 11.0 |
| 3H-8N | 27 | 1 | pEAG186L | T223.4 | 3 | 0.14 | 90 | 14.0 | 1.5 | 9.5 | 6.0 |
| 3H-8N′ | 27 | 1 | pEAG200L | T279.12 | 2 | 0.10 | 60 | 10.2 | 1.3 | 8.0 | 6.0 |
| 3H-9N | 25 | 1 | pEAG186S | T272.3 | 2 | 0.16 | 60 | 12.1 | 1.9 | 6.0 | 6.0 |
| 3H-1N-3H-4N | 55 | 2 | pEAG186M | T222.6 | 2 | 0.61 | 60 | 24.9 | 2.2 | 23.5 | 12.5 |
| 3H-2N-3H-3N | 55 | 2 | pEAG200X | T334.8 | 2 | 0.32 | 60 | 28.6 | 3.2 | 23.5 | 18.0 |
| 2H-2N | 50 | 0 | pEAG186W | T248.1 | 3 | 0.64 | 90 | 6.0 | 1.2 | 2.0 | 2.0 |
| 5H-4N | 56 | 0 | pEAG200T | T296.1 | 2 | 0.97 | 60 | 6.9 | 1.6 | 1.5 | 1.5 |
| 5H-7N | 42 | 0 | pEAG200P | T294.3 | 2 | 0.18 | 60 | 5.7 | 1.6 | 1.0 | 1.0 |
| 5H-8N | 38 | 0 | pEAG200Q | T295.5 | 2 | 0.56 | 60 | 6.1 | 1.7 | 1.0 | 1.0 |
| 3H-7N | 30 | 0 | pEAG186R | T258.2 | 2 | 0.20 | 60 | 3.7 | 0.7 | 1.0 | 1.0 |
| 3H-10N | 23 | 0 | pEAG200N | T281.2 | 2 | 0.88 | 60 | 1.1 | 0.3 | 0.0 | 0.0 |
| GFP | 20 | 0 | pEAG186B | T208.3 | 2 | 0.42 | 60 | 2.8 | 0.9 | 0.0 | 0.0 |
| 2H-9N | 18 | 0 | pEAG186T | T246.1 | 3 | 0.39 | 90 | 3.8 | 0.9 | 1.0 | 1.0 |
| 0H-11N | 0 | 0 | pEAG186Z | T259.1 | 3 | 0.44 | 90 | 1.5 | 0.4 | 0.0 | 0.0 |
| 5H-17N | 23 | 0 | pEAG186O | T230.4 | 2 | 0.48 | 60 | 9.2 | 2.0 | 5.5 | 5.0 |
| 7H-15N | 32 | 0 | pEAG186N | T261.1 | 2 | 0.18 | 60 | 13.0 | 1.8 | 8.5 | 7.5 |
| 337[D] | N/A | N/A | pEAG115CX | T202.4 | 1 | N/A | 24 | 34.3 | 3.5 | 31.5 | 11.5 |
| 337[I] | N/A | N/A | pEAG115CY | T219.4 | 1 | N/A | 24 | 28.0 | 2.5 | 26.0 | 6.0 |
| 4H-7N[I]:0 | 36 | 2 | pEAG199R | T293.2 | 2 | 1.00 | 60 | 0.1 | 0.1 | 0.0 | 0.0 |
| 4H-7N[I]:337[I] | N/A | N/A | pEAG199B | T265.1 | 2 | 0.06 | 48 | 106.5 | 6.9 | 109.5 | 35.0 |
| 4H-7N[D]:337[I] | N/A | N/A | pEAG199D | T267.6 | 1 | N/A | 24 | 32.1 | 4.2 | 28.0 | 13.0 |
| 4H-7N[I]:22:337[I] | N/A | N/A | pEAG204E2 | T322.10 | 2 | 0.22 | 48 | 61.94 | 4.6 | 61 | 19 |
Construct, a unique identifier of each repeat construct; %H, overall amount of homology (per cent), if applicable; #F, the number of triplet frames, if applicable; Plasmid, a unique identifier of the plasmid used to transform N. crassa strain FGSC#9720 to create homokaryotic Strain “A”; Replica crosses, the number of replica crosses analyzed for each repeat repeat construct; P-value, the lowest significance value of the Kolmogorov-Smirnov test obtained from pair-wise comparisons of replica crosses analyzed for each repeat construct; Sample size, the total number of spores analyzed for each repeat construct; Mean, the mean number of mutations (per spore) over the total sequenced region; SEM, standard error of the mean; Median, the median number of mutations (per spore) over the total sequenced region; MAD, the median absolute deviation from the median.