Table 2.
Example for proteins for which DRiPs factors could be defined
| DRiPs |
Retirees |
||||||
| Gene names | DRiPs factor | Gene names | DRiPs factor | Gene names | DRiPs factor | Gene names | DRiPs factor |
| ATP5F1* | 10.51 | RPL10A | 2.36 | PPP2R1A | 0.01 | MAP4 | 0.21 |
| PSMD14 | 8.56 | CLTC | 2.35 | TRIP12 | 0.05 | FASN | 0.21 |
| PSMB8 | 6.39 | CCT8 | 2.32 | PRRC2C | 0.06 | DAZAP1 | 0.22 |
| RPL28 | 6.07 | RPS2 | 2.25 | MKI67 | 0.08 | PCBP2 | 0.23 |
| CCT7 | 5.88 | GRHPR | 2.24 | EIF4G1 | 0.08 | SMARCA2 | 0.23 |
| EIF2S3 | 5.44 | SLC25A3 | 2.23 | MKI67 | 0.09 | PPP2R1A | 0.23 |
| LY75 | 4.95 | PSMB8 | 2.23 | DDX24 | 0.10 | PCBP2 | 0.24 |
| RPN2 | 4.86 | RPL23A | 2.16 | MKI67 | 0.10 | SMARCA2 | 0.24 |
| B2M | 4.81 | CCT4 | 2.14 | DDX21 | 0.11 | TLN1 | 0.25 |
| COX6C | 4.49 | SNRPA | 2.13 | TLN1 | 0.14 | SYMPK | 0.25 |
| ETFB | 4.46 | MFAP1 | 2.12 | CSDE1 | 0.14 | PARP1 | 0.26 |
| ATIC | 4.34 | VARS | 2.10 | SPTBN1 | 0.15 | GTF3C1 | 0.26 |
| RPS7 | 4.24 | ILF2 | 2.09 | LIMA1 | 0.15 | SAP18 | 0.26 |
| PSMD14 | 3.93 | RPL13 | 2.07 | UTP14A | 0.15 | EIF4G1 | 0.27 |
| PHB2 | 3.87 | EFTUD2 | 2.06 | HNRNPL | 0.16 | HNRNPL | 0.28 |
| GRHPR | 3.74 | PSMD14 | 2.00 | LARP1 | 0.16 | TLN1 | 0.28 |
| RPL5 | 3.17 | ILF2 | 2.00 | PRRC2C | 0.16 | RFTN1 | 0.28 |
| RPL14 | 3.15 | RPL6 | 1.96 | MAPRE1 | 0.16 | EIF4A3 | 0.29 |
| HADHA | 3.15 | DDB1 | 1.92 | DDX24 | 0.17 | EIF4G1 | 0.29 |
| RPL10A | 2.99 | RPL13 | 1.87 | RRM1 | 0.17 | RBM4 | 0.30 |
| HIST1H2AB | 2.72 | STT3B | 1.87 | SPTBN1 | 0.18 | RRP15 | 0.30 |
| RPL28 | 2.71 | SF3B3 | 1.86 | DUT | 0.18 | HIST1H1D | 0.31 |
| PSMB8 | 2.68 | RPL7 | 1.84 | PRRC2C | 0.18 | HIST1H1E | 0.32 |
| RPL36 | 2.66 | RPA2 | 1.80 | EIF4G1 | 0.18 | LCP1 | 0.32 |
| NCKAP1L | 2.66 | RPL34 | 1.79 | ATXN2L | 0.18 | PSME3 | 0.32 |
| RPL8 | 2.58 | TCP1 | 1.78 | MKI67 | 0.18 | FASN | 0.33 |
| RPS10 | 2.53 | LYPLA2 | 1.77 | HNRNPK | 0.18 | U2SURP | 0.33 |
| RPL15 | 2.45 | MTA3 | 1.77 | HNRNPUL2 | 0.19 | PTBP1 | 0.34 |
| MS4A1 | 2.44 | NOP14 | 1.75 | PCNA | 0.19 | GORASP2 | 0.34 |
| RPL10A | 2.42 | HLA-DPB1* | 1.74 | ZFR | 0.19 | ADRM1 | 0.34 |
These DRiPs factors were calculated for the 24-h time point in the JY cells. Duplicate names indicate that different DRiPs factors were assigned to separate HLA peptides derived from the same protein. The subunits of ribosomes are bold.
*
The HLA peptide derived from HLA-DPB1 and ATP5F1 are two examples of peptides originating from known signal sequences. The entire dataset is provided in Dataset S1.