Table 3.
Comparison to other species. Linkage group matches to RAD-tag-based maps in rainbow trout O. mykiss and sockeye salmon O. nerka (Everett et al. 2012; Miller et al. 2012; Palti et al. 2012).
| Chinook Linkage Group | Rainbow Trout Linkage Group | Number of hits | Sockeye Salmon Linkage Group | Number of hits |
|---|---|---|---|---|
| 1 | WS16 | 1 | One_25 | 1 |
| 2 | ||||
| 3 | WS01,WS27 | 4 | One_28 | 1 |
| 4 | WS16, WS19 | 4 | One_4, One_11 | 2 |
| 5 | WS03, WS05 | 3 | One_21, One_24 | 3 |
| 6 | WS25 | 3 | ||
| 7 | WS06 | 2 | One_3 | 1 |
| 8 | WS04 | 3 | One_9 | 2 |
| 9 | WS07 | 1 | One_13, One_27M | 2 |
| 10 | WS24 | 10 | ||
| 11 | WS15, WS22 | 5 | One_18 | 1 |
| 12 | WS18 | 2 | One_9, One_13 | 2 |
| 13 | WS13 | 5 | One_27, One_28 M | 4 |
| 14 | WS23 | 4 | ||
| 15 | WS17, WS25 | 2 | One_14 | 1 |
| 16 | WS26 | 3 | One_8 | 1 |
| 17 | WS03 | 3 | One_4 | 1 |
| 18 | WS01 | 4 | One_13 | 2 |
| 19 | WS11 | 2 | One_19 | 2 |
| 20 | One_10 | 1 | ||
| 21 | WS09 | 3 | One_20 | 1 |
| 22 | WS02 | 1 | One_1 | 1 |
| 23 | WS04, WS16 | 2 | One_22 | 1 |
| 24 | WS15 | 2 | One_9, One_16 | 2 |
| 25 | WS10 | 1 | One_7 | 1 |
| 26 | WS08 | 3 | One_20 | 1 |
| 27 | WS08 | 2 | One_23 | |
| 28 | One_6 | 1 | ||
| 29 | WS10 | 1 | One_6 | 1 |
| 30 | WS29 | 1 | One_21 | 1 |
| 31 | WS06 | 1 | One_10, One_13, One_14 | 3 |
| 32 | WS12, WS15 | 3 | ||
| 33 | ||||
| 34 | One_21 | 1 | ||
| Total | 81 | 41 |
RAD, Restriction-site-associated DNA.