Table 5. HLA-A*02 subtyping strategies based on group-specific amplification.
Case | Reaction patternsa | Groupingb | Subsequent treatmentsc | |
---|---|---|---|---|
Main-screening1(gDNA)c | ||||
78C/I3 | 78T/I3 | |||
Case 1 | + | + | GNA2/GA2 | (Below) |
Case 2 | + | − | GNA2/GNA2, GNA2/SA | (Below) |
Case 3 | − | + | GA2/GA2, GA2/SA | Cloning-sequencing(I1/I4, (Seq-I2-RV, Seq-I2-FW, Seq-I3-FW)) |
Case 4 | − | − | SA/SA | (Below) |
For case 1: Sub-screening1(78C/I3) and Sub-screening2(78T/I3)c | ||||
318A/555A | 149C/440G OR 412A/555G | |||
Case 1.1 | − | − | NA2/A2 | PCR(78T/I4), Sequencing(78T/I4, (Seq-I2-RV, Seq-I2-FW, Seq-I3-FW)) |
Case 1.2 | − | + | NA2/SNA2 | |
Case 1.3 | + | − | SA2/A2 | Combining treatments for cases 1.1 and 1.4 |
Case 1.4 | + | + | SA2/SNA2 | PCR(78C/I4), Sequencing(78C/I4, (Seq-I2-RV, Seq-I2-FW)) |
For case 2: Main-screening2(gDNA) and Sub-screening1(78C/I3)c | ||||
77G/538A | 318A/555A | |||
Case 2.1 | − | − | NA2/NA2, NA2/ENA2 | |
Case 2.2 | − | + | NA2/SA2, SA2/SA2, SA2/ENA2 | Cloning-sequencing(I1/I4, (Seq-I2-RV, Seq-I2-FW)) |
Case 2.3 | + | − | A*02:236/NA2 | |
Case 2.4 | + | + | A*02:236/SA2 | PCR(78C/I4), Sequencing(78C/I4, (Seq-I2-RV, Seq-I2-FW)) |
For case 4: Main-screening2(gDNA)c | ||||
77G/538A | ||||
Case 4.1 | − | ENA2/ENA2 | ||
Case 4.2 | + | ENA2/A*02:236, A*02:236/A*02:236 | PCR(I1/I4), Sequencing(I1/I4, Seq-I2-RV) |
Abbreviation: gDNA, genomic DNA.
Reactions are detailed in Table 3.
Expressed as Function(Parameter), e.g., Sub-screening1(78C/I3) means Sub-screening1 operation with amplicons of reaction 78C/I3 as templates; PCR(I1/I4) means PCR operation according to reaction I1/I4; Sequencing(I1/I4, Seq-I2-RV) means sequencing of amplicons of reaction I1/I4 with primer Seq-I2-RV; and Cloning-sequencing(I1/I4, (Seq-I2-RV, Seq-I2-FW, Seq-I3-FW)) means cloning of amplicons of reaction I1/I4 and sequencing of colony PCR products of two separate clones and the original amplicons of reaction I1/I4 with primers Seq-I2-RV, Seq-I2-FW and Seq-I3-FW.