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. 2013 Aug 19;10(6):490–496. doi: 10.1038/cmi.2013.33

Table 5. HLA-A*02 subtyping strategies based on group-specific amplification.

Case Reaction patternsa Groupingb Subsequent treatmentsc
 Main-screening1(gDNA)c
  78C/I3 78T/I3    
Case 1 + + GNA2/GA2 (Below)
Case 2 + GNA2/GNA2, GNA2/SA (Below)
Case 3 + GA2/GA2, GA2/SA Cloning-sequencing(I1/I4, (Seq-I2-RV, Seq-I2-FW, Seq-I3-FW))
Case 4 SA/SA (Below)
 For case 1: Sub-screening1(78C/I3) and Sub-screening2(78T/I3)c
  318A/555A 149C/440G OR 412A/555G    
Case 1.1 NA2/A2 PCR(78T/I4), Sequencing(78T/I4, (Seq-I2-RV, Seq-I2-FW, Seq-I3-FW))
Case 1.2 + NA2/SNA2  
Case 1.3 + SA2/A2 Combining treatments for cases 1.1 and 1.4
Case 1.4 + + SA2/SNA2 PCR(78C/I4), Sequencing(78C/I4, (Seq-I2-RV, Seq-I2-FW))
 For case 2: Main-screening2(gDNA) and Sub-screening1(78C/I3)c
  77G/538A 318A/555A    
Case 2.1 NA2/NA2, NA2/ENA2  
Case 2.2 + NA2/SA2, SA2/SA2, SA2/ENA2 Cloning-sequencing(I1/I4, (Seq-I2-RV, Seq-I2-FW))
Case 2.3 + A*02:236/NA2  
Case 2.4 + + A*02:236/SA2 PCR(78C/I4), Sequencing(78C/I4, (Seq-I2-RV, Seq-I2-FW))
 For case 4: Main-screening2(gDNA)c
  77G/538A    
Case 4.1   ENA2/ENA2  
Case 4.2 +   ENA2/A*02:236, A*02:236/A*02:236 PCR(I1/I4), Sequencing(I1/I4, Seq-I2-RV)

Abbreviation: gDNA, genomic DNA.

a

Reactions are detailed in Table 3.

b

Group names are specified in Figure 1 and Table 4.

c

Expressed as Function(Parameter), e.g., Sub-screening1(78C/I3) means Sub-screening1 operation with amplicons of reaction 78C/I3 as templates; PCR(I1/I4) means PCR operation according to reaction I1/I4; Sequencing(I1/I4, Seq-I2-RV) means sequencing of amplicons of reaction I1/I4 with primer Seq-I2-RV; and Cloning-sequencing(I1/I4, (Seq-I2-RV, Seq-I2-FW, Seq-I3-FW)) means cloning of amplicons of reaction I1/I4 and sequencing of colony PCR products of two separate clones and the original amplicons of reaction I1/I4 with primers Seq-I2-RV, Seq-I2-FW and Seq-I3-FW.