Table 2.
Number of SNPs exclusive and shared between the four analyzed datasets.
| SNPs Sample |
Individual SNP count (known/ novel) |
Tumor and normal overlap |
Exclusive for transcript-tome |
Exclusive for exome |
Transcrip- tomes Overlap |
Exomes Overlap |
Exclusive for Normal |
Exclusive for tumor |
Total overlap |
|---|---|---|---|---|---|---|---|---|---|
| TT | 29013 / 6075 | 10163 / 108 | 19187 / 4097 | 20070 / 897↓ | 8878 / 5156 | 8074 / 83 | |||
| TE | 20978 / 310 | 9803 / 270 | 18405 / 156↓ | 2539 / 152 | |||||
| NT | 32403 / 4229 | 13216 / 130 | 18781 / 5945 | 12339 / 3322 | |||||
| NE | 23149 / 402 | 10776 / 200 | 4617 / 244 |