Table 2.
Divergent haplotype blocks between LH and LN strains identified by OSD analysis and SNP genotyping data
| Haplotype blocks OSD analysis | Haplotype blocks STAR genotyping | ||||
|---|---|---|---|---|---|
| Block number | Start (mb) | End (mb) | Length (mb) | Start (mb) | End (mb) |
| 1 | 29.7 | 30.0 | 0.3 | 29.7 | 30.2 |
| 2 | 30.1 | 30.3 | 0.2 | ||
| 3 | 30.7 | 30.9 | 0.2 | novel | |
| 4 | 39.4 | 39.6 | 0.2 | 38.2 | 39.8 |
| 5 | 41.7 | 43.1 | 1.4 | 42.2 | 43.2 |
| 6 | 43.2 | 43.4 | 0.2 | ||
| 7 | 53.4 | 53.8 | 0.4 | novel | |
| 8 | 62.2 | 63.2 | 1.0 | 62.3 | 65.8 |
| 9 | 63.4 | 64.9 | 1.5 | ||
| 10 | 65 | 65.9 | 0.9 | ||
| 11 | 69.7 | 69.9 | 0.2 | 69.7 | 70.8 |
| 12 | 70.4 | 70.8 | 0.4 | ||
| 13 | 83.6 | 83.9 | 0.3 | novel | |
| 14 | 90.8 | 91.1 | 0.3 | 90.8 | 90.9 |
All genome position coordinates are based on the rn4 assembly.