Table 2.
Significant and suggestive QTL detected in the pre-CC. LogP: negative log to base 10 of the p-value (measure of statistical association).
| Phenotype | Chr | LogP 5% significance threshold | LogP at QTL peak | QTL peak location in Mb | 1.5 LOD drop interval | 95% bootstrap confidence interval | ||||
|---|---|---|---|---|---|---|---|---|---|---|
| Start (Mb) | End (Mb) | Length in Mb (#Genes) | Start (Mb) | End (Mb) | Length in Mb (#Genes) | |||||
| B/T | 6 | 6.93 | 9.49 | 23.458 | 23.217313 | 23.815913 | 0.599 (14) | 9.89947 | 49.307538 | 39.408(741) |
| B/T | 6 | 6.93 | 7.33 | 91.385 | 88.058961 | 92.668757 | 4.610 (117) | 53.868818 | 116.845948 | 62.977(1118) |
| CD11c MFI | 7 | 5.96 | 8.64 | 141.616 | 141.616402 | 141.653981 | 0.038(3) | 131.296863 | 144.257850 | 12.961(466) |
| CD11c MFI | 7 | 5.96 | 8.40 | 129.749 | 136.462451 | 138.639201 | 2.18(14) | 136.462451 | 144.4206 | 7.958(366) |
| CD19+ | 6 | 6.91 | 8.25 | 23.458 | 23.303557 | 23.815913 | 0.512 (13) | 5.463471 | 51.76262 | 46.299(829) |
| CD23 MFI | 8 | 5.89 | 10.96 | 8.638 | 3.083611 | 16.833693 | 13.75(271) | 3.083611 | 22.846868 | 19.764(435) |
| CD4+ | 7 | 6.93 | 6.55 | 141.626 | 141.141539 | 142.24667 | 1.105 (99) | 136.462451 | 151.510949 | 15.048(393) |
| CD4+/CD8+ | 7 | 6.91 | 7.15 | 141.646 | 141.141539 | 142.24667 | 1.105 (99) | 136.462451 | 151.510949 | 15.048(393) |
| CD8+ | 7 | 6.91 | 7.26 | 141.646 | 141.176511 | 142.24667 | 1.070 (94) | 136.462451 | 151.510949 | 15.048(393) |
| H57+ | 4 | 6.93 | 6.78 | 149.608 | 148.759104 | 151.10435 | 2.345 (89) | 134.14498 | 154.469736 | 20.325(694) |
| H57+ | 6 | 6.93 | 9.46 | 23.458 | 23.217313 | 23.815913 | 0.599 (14) | 8.662195 | 37.539042 | 28.877(355) |
| TransB | 3 | 7.59 | 7.84 | 129.76 | 128.983837 | 130.017759 | 1.031 (30) | 107.488451 | 146.110756 | 38.622(604) |