Table 3. List of genes with most significant differences in expression between NFAs and FAs.

Gene	Locus	FA-FPKMa	NFA-FPKM	p_value	FDR
ASAP2	chr2:9346893–9545812	41.37	6.20	5.0×10 −5	0.03
ATP1B2	chr17:7554253–7561089	9.37	99.48	5.0×10 −5	0.03
CDK18	chr1:205473683–205501921	3.95	61.97	5.0×10 −5	0.03
CNPY1	chr7:155293952–155326539	0	0.44	5.0×10 −5	0.03
COL9A2	chr1:40766162–40782939	91.12	5.10	5.0×10 −5	0.03
CSH1	chr17:61972267–61974021	0.57	0	5.0×10 −5	0.03
CSHL1	chr17:61986964–61988618	1.09	0	5.0×10 −5	0.03
FAM138E	chr15:102495087–102496558	0	0.49	5.0×10 −5	0.03
FDCSP	chr4:71091787–71100968	2.05	0	5.0×10 −5	0.03
GNB3	chr12:6949374–6956557	25.85	287.08	5.0×10 −5	0.03
ITPR2	chr12:26488284–26986131	2.88	18.21	5.0×10 −5	0.03
MIR7-2	chr15:89155055–89155165	0	10.86	5.0×10 −5	0.03
ODAM	chr4:71062243–71070293	0.77	0	5.0×10 −5	0.03
ONECUT1	chr15:53049352–53082209	0	2.78	5.0×10 −5	0.03
PADI3	chr1:17575592–17610727	0.77	0	5.0×10 −5	0.03
PITX2	chr4:111538579–111563279	16.01	146.53	5.0×10 −5	0.03
PTH	chr11:13513600–13517567	0	1.71	5.0×10 −5	0.03
RDH10	chr8:74206836–74237520	41.71	4.72	5.0×\10 −5	0.03
RPS6KA2	chr6:166822853–167275771	37.64	6.46	5.0×10 −5	0.03
SEC14L3	chr22:30855215–30868034	1.29	0	5.0×10 −5	0.03
SEMA7A	chr15:74701629–74726299	1.34	83.58	5.0×10 −5	0.03
SLC10A4	chr4:48485359–48491541	6.17	109.53	5.0 × 10 −5	0.03
SMARCD3	chr7:150936058–150974231	37.70	169.90	5.0×10 −5	0.03
SPRR2F	chr1:153084612–153085989	0	0.60	5.0×10 −5	0.03
SSC5D	chr19:55999869–56030466	6.20	81.08	5.0×10 −5	0.03
TFF1	chr21:43782390–43786644	2.09	0	5.0×10 −5	0.03
UNCX	chr7:1272653–1276613	0	2.56	5.0×10 −5	0.03

^aFPKM: fragments per kilo base of exon per million fragments mapped.