Table 3.

Haplotype analysis

Genea	Chrb	Position	SNP1	SNP2	SNP3	SNP min Pc	Global sim Pd	Max-stat sim Pe
LOC284661	1	4370062	rs6679220	rs349410		4.2E–02	2.1E–01	1.9E–01
DAB1	1	58268619	rs873989	rs1213659	rs1202835	1.3E–04	1.5E–02	3.9E–02
NRXN1	2	50761056	rs7576283	rs1037426	rs930295	1.0E–01	7.2E–01	7.3E–01
CTNNA2	2	80715942	rs216617	rs3770369	rs7609261	2.9E–03	3.6E–02	1.2E–01
DPP10	2	116252992	rs10496506	rs11123306		2.1E–01	5.4E–01	8.2E–01
LRP1B	2	140847651	rs13021003	rs2046563	rs17551974	1.5E–02	8.6E–02	2.9E–02
FHIT	3	60694463	rs17361653	rs1882899	rs1716741	1.3E–03	8.6E–04	1.9E–02
NA	3	153382923	rs641025	rs989920	rs325738	2.6E–03	2.6E–03	8.7E–03
NA	3	162481199	rs7652267	rs1478565		8.3E–02	1.3E–01	1.4E–01
NLGN1	3	175393516	rs6806890	rs6779246	rs7623402	1.6E–02	7.2E–02	1.1E–02
NA	4	116523708	rs1112531	rs963251		5.1E–02	3.6E–01	6.4E–01
PDE4D	5	58878531	rs702543	rs17782374	rs35277	8.2E–04	4.7E–04	2.2E–04
NA	6	33080668	rs592625	rs7743563	rs2523666	6.9E–02	4.2E–01	1.9E–01
NA	6	120286484	rs10484965	rs10499094	rs9320695	7.3E–03	1.3E–01	3.7E–01
LAMA2	6	129281463	rs7776116	rs9321142	rs6928495	1.1E–03	3.4E–02	5.9E–03
PARK2	6	162539612	rs6904579	rs3019449	rs17649761	1.6E–03	4.1E–02	1.9E–02
LOC442275	6	164461465	rs206694	rs2764649		4.3E–02	8.1E–02	5.0E–02
CREB5	7	28296787	rs4722801	rs177582		3.7E–02	9.0E–02	1.3E–01
NA	7	95721578	rs2724041	rs2524976		6.9E–03	6.5E–02	1.0E–01
RELN	7	102871243	rs362698	rs17321820	rs1541329	2.4E–02	3.0E–01	2.6E–01
PTN	7	136413862	rs322239	rs322323	rs322236	4.8E–06	8.0E–05	1.0E–05
NA	8	8614503	rs4841017	rs9329165	rs6601729	6.5E–06	1.9E–04	1.7E–04
CSMD1	8	3178277	rs4395910	rs10503232	rs4875610	4.1E–04	8.5E–04	6.2E–04
NRG1	8	32336767	rs1487152	rs7002732	rs12114401	4.6E–04	4.1E–04	3.0E–03
NA	8	108959180	rs1389976	rs10505119		1.9E–02	7.9E–02	3.2E–02
CSMD3	8	114031134	rs10505196	rs4876501	rs10505174	2.2E–02	2.0E–01	4.4E–01
PTPRD	9	8481878	rs6477311	rs1359114	rs10511494	1.2E–02	7.5E–02	3.1E–02
ASTN2	9	116859364	rs2418446	rs10513281	rs10983238	3.4E–02	2.2E–01	4.1E–01
TMEM16C	11	26402767	rs10834976	rs1381181	rs10834971	4.4E–03	1.4E–02	2.7E–02
BDNF	11	27715568	rs985205	rs2049045		1.7E–01	4.3E–01	3.6E–01
DLG2	11	84283401	rs17147761	rs891773	rs10501548	4.4E–02	3.7E–01	4.9E–01
CNTN5	11	98413115	rs10501893	rs10501898	rs10501903	4.1E–02	4.9E–02	6.2E–02
GRIP1	12	65150558	rs4913307	rs12314237	rs12581890	1.2E–02	1.1E–02	2.0E–02
RAB3IP	12	68480702	rs17225638	rs11177914		2.0E–02	6.9E–03	1.5E–02
LOC284058	17	41550514	rs10514901	rs17631303	rs2532276	9.4E–03	6.7E–02	2.2E–02
TCF4	18	51268302	rs1452788	rs12326693	rs9957668	9.3E–04	2.8E–01	3.2E–01
NA	18	52115138	rs9959800	rs1229587		1.7E–04	1.5E–03	1.4E–03
GRIK1	21	30306168	rs2832533	rs2832438		5.4E–03	1.0E–02	1.0E–02
ERG	21	38888946	rs17194186	rs2836502	rs2836365	2.2E–02	2.4E–02	1.8E–02

Abbreviation: NA, not available.

SNPs within a copy number variation region are in bold.

^aSNP associate gene based on NCBI dbSNP.

^bChromosome.

^cMinimum P-value from the single SNP analysis.

^dSimulation P-value for the global score statistic.

^eSimulation P-value for the maximum score statistic.