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. 2014 Feb 21;42(8):4906–4921. doi: 10.1093/nar/gku139

Table 1.

DNA sequences of oligonucleotide primers used in CTCF-ChIP assay

Oligonucleotide Primers for ChIP Assay
Primer Sequence
HSV-5′ 5′-TGCAGTCCGCGCCCTGTGAGTGGTG-3′
HSV-3′ 5′-ACACTGGGGAGGTTGGGAGCAGACC-3′
HSIV-5′ 5′-ATCCCCAGCAGCCATTGACGCAT-3′
HSIV-3′ 5′-CGCAGAGTCCACCACTTCTTCCCAC-3′
HSIII-5′ 5′-ATCAAATCCCTGCGGACACTGCGG-3′
HSIII-3′ 5′-TCCTGGGTGCTTCTGCAGTCTCTGCT-3′
-25 kb-5′ 5′-AAAATGAGACTGCTGGGCCAGGCACG-3′
-25 kb-3′ 5′-ACAAGGCAGGTTGTAGCAGCCTCGT-3′
-15 kb-5′ 5′-CCAAGCCTTTCCCAGTTATAC-3′
-15 kb-3′ 5′-CATCTTGGCCTAGGCCTCGGA-3′
Promoter-5′ 5′-TCCATTAGCACAAGCCCGTCAG-3′
Promoter-3′ 5′-TTTTTCTCTCTCCATCCCTCCAG-3′
Enhancer-5′ 5′-AGAACAATCTGCCCCTTATGGAAAGAC-3′
Enhancer-3′ 5′-CATGATGTTGCCTCACAGCAACCTCCA-3′
TCAM-5′ 5′-TGCAGCCGAATCACCAACCCGT-3′
TCAM-3′ 5′-GCATGATGTGTGATTTATCATGGC-3′
(+)Control-5′ 5′-AGCCGCTATGCCTCAGTGGTCGAT-3′
(+)Control-3′ 5′-GGGCTGTGTAGGGAATGAGTCAA-3′