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. 2014 Feb 7;10(3):1314–1325. doi: 10.1021/ct400995c

Figure 1.

Figure 1

Process of “blurring”, that is, systematically perturbing the ligand within the protein binding pocket, shown for n-butyl benzene (186L). (a) Before blurring, single conformation in the binding pocket. (b) After blurring, numerous conformations superimposed in the binding pocket: front view, (c) side view. Carbon atoms are displayed in gray and hydrogen atoms in white while red symbolizes oxygen and blue represents nitrogen.