Table 5.
2LOmb identifies 12 SNPs, which are located within or near five genes, from the reduced T1D data set
| |
Chromosome |
SNP |
|
SNP pair in the ensemble |
|||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Gene | and location | no. | SNP | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 |
|
MUC21 |
6p21.32 |
1 |
rs2844678 |
|
● |
● |
|
|
|
● |
● |
|
|
|
|
● |
|
|
|
|
|
|
|
| |
|
2 |
rs2523929 |
|
|
|
● |
● |
|
|
|
● |
● |
|
|
|
● |
||||||
| |
|
3 |
rs2530699 |
|
|
|
|
|
● |
|
|
|
|
● |
● |
|
|
● |
|||||
|
MUC22 |
6p21.33 |
4 |
rs9262546 |
● |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
● |
● |
● |
||
| |
|
5 |
rs6933349 |
● |
● |
|
● |
|
● |
||||||||||||||
| |
|
6 |
rs4713423 |
|
|
● |
|
● |
|||||||||||||||
|
PSORS1C1 |
6p21.3 |
7 |
rs9263715 |
|
|
|
|
|
|
● |
|
● |
|
● |
|
|
|
|
● |
||||
| |
|
8 |
rs9263716 |
|
|
|
|
|
|
|
● |
|
● |
|
● |
|
|
|
|
● |
|||
|
TCF19 |
6p21.3 |
9 |
rs9263794 |
|
|
|
|
|
|
|
|
|
|
|
|
● |
● |
● |
|
|
● |
||
|
ATAD1 |
10q23.31 |
10 |
rs12775041 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
● |
|
| |
|
11 |
rs12573160 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
● |
● |
| 12 | rs12781171 | ● | |||||||||||||||||||||
Twenty SNP pairs are present in the ensemble. A pair of dots in the same column denotes a SNP pair.