Table 2.
PCR primers and hybridization probes used in estrogen receptor-α genotyping by real-time PCR combined with melting curve analysis
Polymorphism site | Melting Temperature (°C) | Oligonucleotide sequences |
Exon 1/codon 10 | ||
TCT | 56 | Primers for PCR reaction: |
TCC | 64 | Sense: 5'-GGTTTCTGAGCCTTCTGCCCTG-3' (301–322) |
Antisense: 5'-AGGCCGGTCTGACCGTAGA-3' (593–575) | ||
Hybridization probes: | ||
Sensor: 5'-ACACCAAAGCATCCGGGATGred-3' (377–396) | ||
Anchor: 5'-fluoresceinCCCTACTGCATCAGATCCAAGGGAACG-3' (398–424) | ||
Exon 4/codon 325 | ||
CCC | 58.5 | Primers for PCR reaction: |
CCG | 65.5 | Sense: 5'-ACCTGTGTTTTCAGGGATACGA-3' (336–357) |
Antisense: 5'-GCTGCGCTTCGCATTCTTAC-3' (705–686) | ||
Hybridization probes: | ||
Sensor: 5'-GCTGAGCCCCCGATACTCTAred-3' (554–573) | ||
Anchor: 5'-fluoresceinCCGAGTATGATCCTACCAGACCCTTCA-3' (576–602) | ||
Exon 8/codon 594 | ||
ACG | 61 | Primers for PCR reaction: |
ACA | 67 | Sense: 5'-CTGTGTCTTCCCACCTACAG-3' (337–356) |
Antisense: 5'-GGGTAAAATGCAGCAGGGATT-3' (641–621) | ||
Hybridization probes: | ||
Sensor: 5'-TCCCTGCCACAGTCTGAGAGCred-3' (575–595) | ||
Anchor: 5'-fluoresceinCCCTGGCTCCCACACGGTTCAG-3' (597–618) |