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. 2004 Feb 26;6(3):R180–R186. doi: 10.1186/bcr770

Table 2.

PCR primers and hybridization probes used in estrogen receptor-α genotyping by real-time PCR combined with melting curve analysis

Polymorphism site Melting Temperature (°C) Oligonucleotide sequences
Exon 1/codon 10
 TCT 56 Primers for PCR reaction:
 TCC 64  Sense: 5'-GGTTTCTGAGCCTTCTGCCCTG-3' (301–322)
 Antisense: 5'-AGGCCGGTCTGACCGTAGA-3' (593–575)
Hybridization probes:
 Sensor: 5'-ACACCAAAGCATCCGGGATGred-3' (377–396)
 Anchor: 5'-fluoresceinCCCTACTGCATCAGATCCAAGGGAACG-3' (398–424)
Exon 4/codon 325
 CCC 58.5 Primers for PCR reaction:
 CCG 65.5  Sense: 5'-ACCTGTGTTTTCAGGGATACGA-3' (336–357)
 Antisense: 5'-GCTGCGCTTCGCATTCTTAC-3' (705–686)
Hybridization probes:
 Sensor: 5'-GCTGAGCCCCCGATACTCTAred-3' (554–573)
 Anchor: 5'-fluoresceinCCGAGTATGATCCTACCAGACCCTTCA-3' (576–602)
Exon 8/codon 594
 ACG 61 Primers for PCR reaction:
 ACA 67  Sense: 5'-CTGTGTCTTCCCACCTACAG-3' (337–356)
 Antisense: 5'-GGGTAAAATGCAGCAGGGATT-3' (641–621)
Hybridization probes:
 Sensor: 5'-TCCCTGCCACAGTCTGAGAGCred-3' (575–595)
 Anchor: 5'-fluoresceinCCCTGGCTCCCACACGGTTCAG-3' (597–618)