Table 2.
SNP | Allele | Initial cohorta (n = 162)
|
P-value | Replication cohort (n = 155)
|
P-value | Combined cohort (n = 317)
|
P-value | P-valueb | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
106 cases, 56 controls
|
87 cases, 68 controls
|
193 cases, 124 controls
|
||||||||||||
Case | Ctrl | OR (95% CI) | Case | Ctrl | OR (95% CI) | Case | Ctrl | OR (95% CI) | ||||||
TPMT | ||||||||||||||
| ||||||||||||||
rs12201199 | A | 28 | 1 | 16.9 (2.3–125.9) | 0.00022 | 21 | 3 | 6.1 (1.8–20.9) | 0.0013 | 49 | 4 | 8.9 (3.2–24.9) | 8.7 × 10−7 | 4.0 × 10−5 |
| ||||||||||||||
T | 184 | 111 | 153 | 133 | 337 | 244 | ||||||||
| ||||||||||||||
rs1142345 | G | 19 | 1 | 10.9 (1.4–82.7) | 0.0017 | 16 | 3 | 4.5 (1.3–15.7) | 0.011 | 35 | 4 | 6.1 (2.1–17.3) | 0.00014 | 0.00039 |
| ||||||||||||||
A | 193 | 111 | 158 | 133 | 351 | 244 | ||||||||
| ||||||||||||||
rs1800460 | A | 16 | 0 | 18.0 (1.1–302.7) | 0.0031 | 13 | 3 | 3.6 (1.0–12.8) | 0.038 | 29 | 3 | 6.6 (2.0–21.8) | 0.00043 | 0.00073 |
| ||||||||||||||
G | 196 | 110 | 161 | 133 | 357 | 243 | ||||||||
| ||||||||||||||
COMT | ||||||||||||||
| ||||||||||||||
rs4646316 | G | 176 | 74 | 2.5 (1.5–4.3) | 0.00055 | 141 | 104 | 1.3 (0.8–2.3) | 0.33 | 317 | 178 | 1.8 (1.2–2.6) | 0.0021 | 0.0068 |
| ||||||||||||||
A | 36 | 38 | 33 | 32 | 69 | 70 | ||||||||
| ||||||||||||||
rs9332377 | A | 36 | 4 | 5.5 (1.9–16.0) | 0.00018 | 38 | 23 | 1.4 (0.8–2.4) | 0.28 | 74 | 27 | 1.9 (1.2–3.1) | 0.0054 | 0.043 |
| ||||||||||||||
G | 176 | 108 | 136 | 113 | 312 | 221 | ||||||||
| ||||||||||||||
ABCC3 | ||||||||||||||
| ||||||||||||||
rs1051640 | G | 182 | 83 | 2.1 (1.2–3.8) | 0.0092 | 146 | 101 | 1.8 (1.0–3.3) | 0.036 | 328 | 184 | 2.0 (1.3–2.9) | 0.00078 | 0.0033 |
| ||||||||||||||
A | 30 | 29 | 28 | 35 | 58 | 64 |
Boldface numbers are results more significant in current combined cohort than in previous combined cohort (ref. 9).
CI, confidence interval; Ctrl, control; OR, odds ratio; SNP, single-nucleotide polymorphism.
Results from the initial combined cohort (ref. 9) compared with the current replication cohort as well as all cohorts combined.
Adjusted for age, vincristine treatment, germ-cell tumor, and cranial irradiation.