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. 2014 Mar 28;6(4):897–911. doi: 10.1093/gbe/evu061

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© The Author(s) 2014. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Fig. 4.— — Phylogenetic analyses. (A) Bayesian MCMC phylogenetic analyses of 83 protein-coding chloroplast genes: PhyloBayes CAT + gcpREV + Γ, marginal likelihood: −L_h = 244,645.3855. (B) Strict consensus tree of six most parsimonious trees (length 239, consistency index = 0.243, retention index = 0.786) resulting from analysis of the structural data (gene and intron content, operon structure). Numbers at nodes are posterior probabilities and nonparametric bootstrap values for (A) and (B), respectively. The nodes representing the HLPA are highlighted.