Table 2.
Statistics of Partial Assemblies and of Final Assembly (WGSAS)
| Assembly | Number of Assembled Supercontigs and Contigsa | Mean Length (nt) | Contig Length Range (nt) | N50 |
|---|---|---|---|---|
| Illumina (Split 0) | 1,564,223 | 177.3 | 80–30,891 | 190 |
| Illumina (Split 16) | 592,971 | 155.2 | 80–22,320 | 164 |
| Illumina (Split 64) | 354,698 | 159.9 | 80–7,439 | 174 |
| Illumina (Split 256) | 289,536 | 162.6 | 80–4,768 | 181 |
| Illumina (Split 512) | 287,453 | 159.8 | 80–4,529 | 178 |
| Illumina (Total)b | 1,949,661 | 195.6 | 80–30,891 | 214 |
| 454 | 1,096,975 | 445.0 | 80–12,778 | 723 |
| 454 + Illumina | 123,849 | 798.4 | 80–12,208 | 1,180 |
| WGSAS | 210,068 | 1,167.0 | 80–30,891 | 1,505 |
aSupercontigs are contigs (as assembled by CLC-BIO) assembled to other contigs by Minimus 2; contigs are sequences assembled by CLC-BIO that resulted as singleton after Minimus 2 assembly.
bMade by assembling contigs obtained with differently sized packages of Illumina reads.