Table 6.
Composition of the Sanger-Sequenced Small Insert Library
| Sequence Type | Order/Superfamily | Number of Sequences | Percentage | |
|---|---|---|---|---|
| DNA Transposons | Unclassified | 4 | 0.06 | |
| Subclass I | 321 | 5.16 | ||
| Subclass II | 49 | 0.79 | ||
| Total | 374 | 6.01 | ||
| Retrotransposons | Unclassified | 1 | 0.02 | |
| LTR/Copia | 1,110 | 17.83 | ||
| LTR/Gypsy | 1,277 | 20.51 | ||
| LTR/retrovirus | 32 | 0.51 | ||
| LINE | 59 | 0.95 | ||
| Total | 2,479 | 39.82 | ||
| Tandem repeats | 1,504 | 24.16 | ||
| rDNA | 103 | 1.65 | ||
| Similarity to genes | 513 | 8.24 | ||
| Unknown repeatsa | 80 | 1.31 | ||
| Unknown | 36 | 0.56 | ||
| No hits found | 1,137 | 18.26 | ||
| Total nuclear genomic sequences | 6,226 | |||
| Chloroplast | 149 | |||
| Mitochondrion | 33 | |||
| Total sequences | 6,408 | |||
aUnknown sequences that are assembled using CAP3 (see text).