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. 2014 Mar 26;6(4):776–791. doi: 10.1093/gbe/evu058

Table 6.

Composition of the Sanger-Sequenced Small Insert Library

Sequence Type Order/Superfamily Number of Sequences Percentage
DNA Transposons Unclassified 4 0.06
Subclass I 321 5.16
Subclass II 49 0.79
Total 374 6.01
Retrotransposons Unclassified 1 0.02
LTR/Copia 1,110 17.83
LTR/Gypsy 1,277 20.51
LTR/retrovirus 32 0.51
LINE 59 0.95
Total 2,479 39.82
Tandem repeats 1,504 24.16
rDNA 103 1.65
Similarity to genes 513 8.24
Unknown repeatsa 80 1.31
Unknown 36 0.56
No hits found 1,137 18.26
Total nuclear genomic sequences 6,226
Chloroplast 149
Mitochondrion 33
Total sequences 6,408

aUnknown sequences that are assembled using CAP3 (see text).