Table 8.
Average Coverage of a Sample of Olive LTR-Retrotransposons Measured Separately on LTR and Inter-LTR Regions
| Superfamily | Cluster Number | Average Coverage |
LTR to Inter-LTR Ratio | |
|---|---|---|---|---|
| LTR | Inter-LTR | |||
| Copia | 24 | 1320.5 | 3816.5 | 0.346 |
| 39 | 7107.8 | 5380.4 | 1.321 | |
| 48 | 3161.2 | 3119.2 | 1.013 | |
| 63 | 1451.9 | 1668.7 | 0.870 | |
| 66 | 2874.1 | 2186.8 | 1.314 | |
| 72 | 3068.2 | 1570.2 | 1.954 | |
| 86 | 1557.3 | 2444.8 | 0.637 | |
| 90 | 418.3 | 1475.4 | 0.284 | |
| 102 | 1422.8 | 1348.1 | 1.055 | |
| 108 | 507.1 | 1101.8 | 0.460 | |
| 112 | 1414.5 | 917.7 | 1.541 | |
| 114 | 1306.8 | 1211.7 | 1.078 | |
| 142 | 1098.0 | 1096.2 | 1.002 | |
| 165 | 744.8 | 797.5 | 0.934 | |
| 172 | 409.1 | 561.3 | 0.729 | |
| 178 | 1148.4 | 652.8 | 1.759 | |
| 212 | 983.4 | 520.4 | 1.890 | |
| 213 | 674.7 | 450.8 | 1.497 | |
| 239 | 509.9 | 497.6 | 1.025 | |
| 262 | 343.4 | 418.3 | 0.821 | |
| Mean | 1.077 | |||
| Gypsy | 45 | 5434.3 | 3318.0 | 1.638 |
| 69 | 3669.1 | 1455.0 | 2.522 | |
| 146 | 10393.6 | 914.3 | 11.368 | |
| 149 | 1338.2 | 2626.0 | 0.510 | |
| 157 | 38338.0 | 869.2 | 44.107 | |
| 180 | 1208.5 | 658.0 | 1.837 | |
| Mean | 10.330 | |||