Table 2.
Gene ontology analysis of 972 up-regulated genes
| GO ID | GO term | Query item | Background item | FDR p-value |
|---|---|---|---|---|
| |
biological process |
|
||
|
Regulation of biological process | ||||
|
regulation of metabolic process
| ||||
| GO:0080090 |
regulation of primary metabolic process |
53 |
324 |
8.30E-30 |
| GO:0045449 |
regulation of transcription |
51 |
321 |
3.00E-28 |
| GO:0060255 |
regulation of macromolecule metabolic process |
53 |
326 |
1.10E-29 |
| GO:0010556 |
regulation of macromolecule biosynthetic process |
52 |
322 |
4.40E-29 |
| GO:0010468 |
regulation of gene expression |
52 |
324 |
5.50E-29 |
| GO:0009889 |
regulation of biosynthetic process |
52 |
322 |
4.40E-29 |
| GO:0051171 |
regulation of nitrogen compound metabolic process |
51 |
323 |
3.90E-28 |
|
regulation of cellular process
|
|
|
|
|
| GO:0007165 |
signal transduction |
11 |
106 |
6.30E-05 |
| GO:0007242 |
intracellular signaling cascade |
10 |
68 |
6.90E-06 |
|
Biological regulation |
|
|
|
|
| GO:0065008 |
regulation of biological quality |
12 |
14 |
4.40E-18 |
|
Multi-organism process |
|
|
|
|
| GO:0051707 |
response to other organism |
9 |
39 |
4.80E-07 |
| GO:0009617 |
response to bacterium |
6 |
7 |
3.80E-09 |
|
Cellular process |
|
|
|
|
|
cellular response to stimulus
|
|
|
|
|
| GO:0070887 |
cellular response to chemical stimulus |
7 |
43 |
0.00013 |
| GO:0055085 |
transmembrane transport |
9 |
12 |
1.10E-12 |
|
Metabolic process |
|
|
|
|
|
primary metabolic process
|
|
|
|
|
| GO:0005975 |
carbohydrate metabolic process |
37 |
138 |
3.60E-29 |
| GO:0005976 |
polysaccharide metabolic process |
12 |
57 |
1.10E-08 |
| GO:0006022 |
aminoglycan metabolic process |
6 |
21 |
1.70E-05 |
| GO:0006030 |
chitin metabolic process |
6 |
21 |
1.70E-05 |
| GO:0016052 |
carbohydrate catabolic process |
17 |
45 |
1.10E-16 |
| GO:0006629 |
lipid metabolic process |
21 |
81 |
1.20E-16 |
| GO:0019538 |
protein metabolic process |
80 |
487 |
4.30E-44 |
| GO:0006508 |
proteolysis |
23 |
126 |
1.30E-14 |
|
secondary metabolic process
|
|
|
|
|
| GO:0006721 |
terpenoid metabolic process |
5 |
54 |
0.025 |
| GO:0016101 |
diterpenoid metabolic process |
5 |
35 |
0.0036 |
| GO:0009698 |
phenylpropanoid metabolic process |
6 |
11 |
2.10E-07 |
|
macromolecule metabolic process
|
|
|
|
|
| GO:0019538 |
protein metabolic process |
80 |
487 |
4.30E-44 |
| GO:0043412 |
macromolecule modification |
50 |
265 |
3.60E-31 |
| GO:0006464 |
protein modification process |
50 |
264 |
3.10E-31 |
| GO:0044036 |
cell wall macromolecule metabolic process |
11 |
21 |
6.10E-13 |
| GO:0016998 |
cell wall macromolecule catabolic process |
7 |
21 |
8.60E-07 |
| GO:0010467 |
gene expression |
55 |
419 |
3.50E-26 |
| GO:0009059 |
macromolecule biosynthetic process |
56 |
569 |
1.30E-20 |
|
Establishment of localization |
|
|
|
|
|
transport
|
|
|
|
|
| GO:0006811 |
ion transport |
13 |
66 |
5.40E-09 |
| GO:0006812 |
cation transport |
10 |
65 |
4.60E-06 |
| GO:0030001 |
metal ion transport |
10 |
36 |
1.30E-08 |
|
Response to stimulus |
|
|
|
|
| GO:0009719 |
response to endogenous stimulus |
8 |
106 |
0.0075 |
| GO:0009628 |
response to abiotic stimulus |
7 |
41 |
9.70E-05 |
| GO:0009607 |
response to biotic stimulus |
13 |
39 |
4.10E-12 |
| GO:0006950 |
response to stress |
46 |
103 |
2.00E-47 |
| GO:0006952 |
defense response |
16 |
59 |
3.40E-13 |
| GO:0006979 |
response to oxidative stress |
11 |
17 |
2.40E-14 |
| GO:0042221 |
response to chemical stimulus |
27 |
133 |
3.00E-18 |
| GO:0010033 |
response to organic substance |
8 |
106 |
0.0075 |
| |
molecular function |
|
||
|
Molecular transducer activity |
|
|
|
|
| GO:0004871 |
signal transducer activity |
13 |
32 |
2.00E-13 |
|
Transporter activity |
|
|
|
|
|
substrate-specific transporter activity
|
|
|
|
|
| GO:0022891 |
substrate-specific transmembrane transporter |
14 |
79 |
4.90E-09 |
| GO:0015075 |
ion transmembrane transporter activity |
9 |
68 |
5.20E-05 |
| GO:0008324 |
cation transmembrane transporter activity |
5 |
62 |
0.04 |
|
transmembrane transporter activity
|
|
|
|
|
| GO:0016820 |
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances |
5 |
17 |
9.30E-05 |
| GO:0042626 |
ATPase activity, coupled to transmembrane movement of substances |
5 |
17 |
9.30E-05 |
|
active transmembrane transporter activity
|
|
|
|
|
| GO:0015291 |
secondary active transmembrane transporter |
7 |
24 |
2.20E-06 |
| GO:0015399 |
primary active transmembrane transporter activity |
5 |
25 |
0.00064 |
|
Antioxidant activity |
|
|
|
|
| GO:0004601 |
peroxidase activity |
8 |
68 |
0.00036 |
|
Transcription regulator activity |
|
|
|
|
| GO:0003700 |
transcription factor activity |
26 |
116 |
9.00E-19 |
|
Catalytic activity |
|
|
|
|
|
oxidoreductase activity
|
|
|
|
|
| GO:0004497 |
monooxygenase activity |
21 |
47 |
2.40E-22 |
| GO:0051213 |
dioxygenase activity |
7 |
7 |
1.10E-11 |
| GO:0015036 |
disulfide oxidoreductase activity |
7 |
10 |
1.20E-09 |
|
transferase activity
|
|
|
|
|
| GO:0016757 |
transferase activity, transferring glycosyl groups |
24 |
31 |
1.00E-33 |
| GO:0016758 |
transferase activity, transferring hexosyl groups |
19 |
30 |
3.70E-24 |
| GO:0016772 |
transferase activity, transferring phosphorus-containing groups |
54 |
426 |
5.10E-25 |
| GO:0016773 |
phosphotransferase activity, alcohol group as |
47 |
244 |
6.30E-30 |
| GO:0004672 |
protein kinase activity |
42 |
235 |
1.40E-25 |
| GO:0016301 |
kinase activity |
51 |
261 |
1.10E-32 |
|
hydrolase activity
|
|
|
|
|
| GO:0016798 |
hydrolase activity, acting on glycosyl bonds |
25 |
87 |
6.40E-21 |
| GO:0004553 |
hydrolase activity, hydrolyzing O-glycosy |
24 |
85 |
6.50E-20 |
| GO:0004568 |
chitinase activity |
9 |
21 |
1.00E-09 |
|
Binding |
|
|
|
|
|
carbohydrate binding
|
|
|
|
|
| GO:0005529 |
sugar binding |
6 |
10 |
9.10E-08 |
|
nucleic acid binding
|
|
|
|
|
|
ion binding
|
|
|
|
|
| GO:0043169 |
cation binding |
126 |
175 |
6.50E-166 |
| GO:0046872 |
metal ion binding |
111 |
173 |
1.60E-137 |
| GO:0046914 |
transition metal ion binding |
80 |
132 |
9.80E-97 |
| GO:0008270 |
zinc ion binding |
30 |
89 |
3.60E-27 |
| GO:0005507 |
copper ion binding |
6 |
19 |
9.00E-06 |
| GO:0005509 | calcium ion binding | 20 | 39 | 7.80E-23 |