Table 3.
List of rice genes associated with crown root, lateral root, root hair formation after FA exposures
|
Gene name |
RAB-DB Locus ID |
TIGR Locus ID |
Short exposures |
Long exposures |
Description |
|---|---|---|---|---|---|
| Fold change a | Fold change a | ||||
|
Crown root-related genes | |||||
|
OsCRL1 |
Os03g0149000 |
LOC_Os03g05500 |
−1.09 |
1.15 |
Protein of unknown function DUF260 domain containing protein. |
|
OsCRL4 |
Os03g0666100 |
LOC_Os03g46330 |
−1.21 |
−1.04 |
SEC7-like domain containing protein. |
|
OsCRL5 |
Os07g0124700 |
LOC_Os07g03250 |
1.64 |
1.06 |
ANT (Ovule development protein aintegumenta). |
|
OsARL1 |
Os03g0149100 |
LOC_Os03g05510 |
|
|
|
|
WOX11 |
Os07g0684900 |
LOC_Os07g48560 |
1.86 |
−1.39 |
Homeobox domain containing protein. |
|
Lateral root-related genes | |||||
|
ARF-16 |
Os06g0196700 |
LOC_Os06g09660 |
−1.73* |
−1.43* |
Auxin response factor 1. |
|
AUX/IAA-1 |
Os01g0178500 |
LOC_Os01g08320 |
1.88* |
−1.20 |
AUX/IAA protein family protein. |
|
AUX/IAA-11 |
Os03g0633500 |
LOC_Os03g43400 |
1.07 |
−1.40 |
Auxin-responsive protein IAA17 (Indoleacetic acid-induced protein 17) (Auxin response 3). |
|
AUX/IAA-13 |
Os03g0742900 |
LOC_Os03g53150 |
1.22 |
−1.04 |
AUX/IAA protein family protein. |
|
AUX/IAA-23 |
Os06g0597000 |
LOC_Os06g39590 |
1.77* |
−1.07 |
Auxin-responsive protein IAA14 (Indoleacetic acid-induced protein 14) (SOLITARY-ROOT protein). |
|
AUX/IAA-29 |
Os12g0601400 |
LOC_Os12g40900 |
1.16* |
−1.28 |
Auxin-responsive protein (Aux/IAA) (Fragment). |
|
OsCel9C |
Os05g0212300 |
LOC_Os05g12150 |
−1.59* |
1.43* |
Endo-beta-1,4-glucanase precursor (EC 3.2.1.4). |
|
Root hair-related genes | |||||
|
OsEXPA30 |
Os10g0535900 |
LOC_Os10g39110 |
|
|
|
|
OsRHL1 |
Os06g0184000 |
LOC_Os06g08500 |
|
|
|
|
OsCSLD1 |
Os10g0578200 |
LOC_Os10g42750 |
1.47 |
−1.94* |
Cellulose synthase-9. |
|
OsEXPA17 |
Os06g0108600 |
LOC_Os06g01920 |
|
|
|
|
OsEXPB5 |
Os04g0552200 |
LOC_Os04g46650 |
1.22 |
1.11 |
Beta-expansin 5. |
| OsAPY1 | Os07g0682800 | LOC_Os07g48430 | 1.35 | −1.05 | Apyrase. |
a The fold change in expression of each gene after FA treatment was calculated by the mean from 3 biological replicates and false discovery rate <0.1 is shown with a asterisk.