Table 5.
Ferulic acid-responsive transcripts related to transporter
| |
Short exposures |
Long exposures |
|||||
|---|---|---|---|---|---|---|---|
| Family name | In genome | On array | Detected | Increase a | Decrease | Increase | Decrease |
|
ATP-dependent |
|
|
|
|
|
|
|
| ATP-binding Cassette (ABC) Superfamily |
130 |
115 |
80 |
17* |
1 |
3 |
0 |
| P-type ATPase (P-ATPase) Superfamily |
45 |
42 |
37 |
3 |
0 |
0 |
0 |
|
Ion channels |
|
|
|
|
|
|
|
| Ammonia Transporter Channel (Amt) Family |
12 |
8 |
7 |
0 |
2 |
0 |
0 |
| Annexin (Annexin) Family |
9 |
6 |
6 |
1 |
0 |
1 |
0 |
| Glutamate-gated Ion Channel (GIC) Family of Neurotransmitter |
21 |
12 |
10 |
1 |
0 |
1 |
0 |
| Major Intrinsic Protein (MIP) Family |
37 |
33 |
24 |
0 |
0 |
0 |
1 |
|
Secondary transporter |
|
|
|
|
|
|
|
| Amino Acid/Auxin Permease (AAAP) Family |
63 |
52 |
41 |
5 |
0 |
0 |
0 |
| Auxin Efflux Carrier (AEC) Family |
19 |
16 |
11 |
2 |
1 |
0 |
0 |
| Amino Acid-Polyamine-Organocation (APC) Family |
27 |
22 |
20 |
1 |
0 |
0 |
0 |
| Aromatic Acid Exporter (ArAE) Family |
14 |
13 |
6 |
1 |
0 |
1 |
0 |
| Arsenite-Antimonite (ArsB) Efflux Family |
3 |
3 |
3 |
1 |
0 |
0 |
0 |
| Ca2+:Cation Antiporter (CaCA) Family |
16 |
15 |
13 |
1 |
0 |
0 |
0 |
| Chloride Carrier/Channel (ClC) Family |
9 |
9 |
8 |
0 |
1 |
0 |
0 |
| Divalent Anion:Na + Symporter (DASS) Family |
7 |
7 |
5 |
1 |
0 |
0 |
0 |
| Drug/Metabolite Transporter (DMT) Superfamily |
123 |
106 |
86 |
4 |
1 |
0 |
1 |
| K + Transporter (Trk) Family |
7 |
7 |
2 |
1 |
0 |
0 |
0 |
| Mitochondrial Carrier (MC) Family |
61 |
59 |
55 |
2 |
0 |
0 |
0 |
| Major Facilitator Superfamily (MFS) |
151 |
133 |
103 |
9 |
2 |
1 |
1 |
| Multidrug/Oligosaccharidyl-lipid/Polysaccharide (MOP) Flippase Superfamily |
57 |
44 |
34 |
5 |
1 |
0 |
0 |
| Monovalent Cation:Proton Antiporter-2 (CPA2) Family |
20 |
18 |
4 |
1 |
0 |
1 |
0 |
| Proton-dependent Oligopeptide Transporter (POT) Family |
86 |
74 |
50 |
5 |
0 |
0 |
0 |
| Telurite-resistance/Dicarboxylate Transporter (TDT) Family |
9 |
8 |
4 |
0 |
1 |
1 |
0 |
| Sulfate Permease (SulP) Family |
14 |
14 |
13 |
1 |
0 |
0 |
0 |
| Zinc (Zn2+)-Iron (Fe2+) Permease (ZIP) Family | 18 | 16 | 12 | 2 | 0 | 0 | 0 |
a Functional categories of genes, total number of genes found within the rice genome, numbers of genes present on and detected on arrays, and numbers of genes showing significant differences (FDR <0.1) in transcript abundance are shown in rows and columns labeled accordingly. Transporter families that are overrepresented in the response group are shown with asterisks (P < 0.05).