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. 2013 Oct 17;14:709. doi: 10.1186/1471-2164-14-709

Table 7.

Combined chronic C. pneumoniae and recurrent A. actinomycetemcomitans infections-enriched GO terms in the epididymal AT transcriptome

GO category Enriched GO term Go term p-value a GO term-associated gene products
Up-regulated b Down-regulated b
GO:0045653
Negative regulation of megakaryocyte differentiation
<0.001
-
Hist1h4h, Hist1h4i, Hist1h4k, Hist1h4j
GO:0006334
Nucleosome assembly
<0.001
Sox9
Hist1h4j, Hist1h4i, Hist1h4k, Hist1h4h, Hist1h3d, Hist2h2ac
GO:0005515
Protein binding
<0.001
BC021891, Lrrc48, Gja1, Cldn2, Lrtm1, Pcp4l1, Cldn11, Ubd, Dynlrb2, Mt3, Clic6, Sh3gl2, Lrp2, Nme7, Slc40a1, Cxcl13, Fcgr4, Spag6, Ccl8, Sox9, Alox12, Sfrp1, Ighv1-62, Col6a5, C7, Ighg3, Ighg, LOC100047788, Igk-C, D6Mit97, Igk-V5, Igkv12-46, LOC384419, LOC637227, Igkv4-68
Itga11, Acta1, Bmp3, Sfrp5, Hist1h4i, Hist1h4h, Hist1h4k, Wdr92, Hist1h3d, Hist1h4j
GO:0003823
Antigen binding
<0.001
LOC100047788, Igk-C
-
GO:0016337
Cell-cell adhesion
0.004
Sox9, Cxcl13, Cldn11, 1110049B09Rik, Cldn2, Dsg2
Chst4
GO:0016338
Calcium-independent cell-cell adhesion
0.011
Cldn2, Cldn11
-
GO:2000117
Negative regulation of cysteine-type endopeptidase activity
0.016
Sfrp1, Mt3
-
GO:0019731
Antibacterial humoral response
0.016
LOC100047788
-
GO:0019730
Antimicrobial humoral response
0.016
LOC100047788
-
GO:0008219
Cell death
0.016
Mt3, Alox12, Sox9, Slc40a1, Sfrp1, Acsbg1, Mmd2, Ubd, Bex2, Dsg2, Gja1
Lyz1, Wdr92
GO:0071504
Cellular response to heparin
0.021
Sfrp1, Sox9
-
GO:0006352
Transcription initiation, DNA-dependent
0.021
-
Hist1h4h, Hist1h4i, Hist1h4k, Hist1h4j
GO:0019835
Cytolysis
0.024
Mmd2
Lyz1
GO:0008253 5′-nucleotidase activity 0.041 Nt5e, Acpp -

aP-values are corrected for multiple hypotheses using Benjamini-Hochberg false discovery rate.

bFold change limit 2.0.

Number of biological replicates is 3.

GO, gene ontology. The maximum of 20 GO categories is shown.