Table 2.
Variance components for the five pooled RNA samples across 108 replicates
Pooled RNA sample | Mean ROR score |
Variance component (%) |
Total variance | Total SD | ||||
---|---|---|---|---|---|---|---|---|
Reagent lot | Site | Operator | Run | Within-run | ||||
Basal-like |
55.4 |
0.059 (20%) |
0.000 (0%) |
0.000 (0%) |
0.046 (15%) |
0.194 (65%) |
0.299 (100%) |
0.55 |
HER2-enriched |
76.2 |
0.165 (37%) |
0.000 (0%) |
0.000 (0%) |
0.000 (0%) |
0.277 (63%) |
0.442 (100%) |
0.66 |
Luminal A |
31.4 |
0.010 (2%) |
0.000 (0%) |
0.000 (0%) |
0.134 (30%) |
0.296 (67%) |
0.44 (100%) |
0.66 |
Luminal B 1 |
55.0 |
0.105 (18%) |
0.000 (0%) |
0.000 (0%) |
0.046 (8%) |
0.426 (74%) |
0.576 (100%) |
0.76 |
Luminal B 2 | 64.8 | 0.119 (21%) | 0.014 (2%) | 0.000 (0%) | 0.064 (11%) | 0.380 (66%) | 0.576 (100%) | 0.76 |
The percent of total variance is listed below the estimated variance.