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. 2014 Mar 12;15(1):188. doi: 10.1186/1471-2164-15-188

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© Melicher et al.; licensee BioMed Central Ltd. 2014

This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Performance of meta-assembly across species. A single assembly using Velvet-Oases with a K-mer length of 25 (light gray) was compared to the multiple k-mer length meta-assembly (black) for four species. Meta-assembly improved overall transcript length. The total assembled base-pairs (A), transcript number (B), percent of reads used in contigs (C), and median transcript length (D) show improvement in transcript assembly.