Table 1.
Comparison of assemblers and identification of unique transcripts
| Assembler | Contigs | Contig n50 | BLAST hits | Unique hits |
|---|---|---|---|---|
| Velvet-Oases | 18960 | 296 | 5114 | 1817 |
| Abyss | 19664 | 127 | 5341 | 1566 |
| Newbler | 13398 | 208 | 4302 | 1509 |
| Trinity | 25144 | 244 | 6826 | 2194 |
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