Table 1. Comparison of the classifications obtained with the PASTEC, TEClass and RepClass tools.
PASTEC (Wicker's) Class | PASTEC (Wicker's) Order | TEClass Class | TEClass Order | RepClass Class | RepClass Order |
Class I (Retrotransposons) | |||||
LTR | Retro | LTR | Class I | LTR/DIRS/PLE | |
DIRS | Retro | LTR | Class I | LTR/DIRS/PLE | |
PLE | Retro | LINE | Class I | LTR/DIRS/PLE | |
LARD* | Retro | na | Class I | na | |
TRIM* | Retro | na | Class I | na | |
LINE | Retro | LINE | Class I | LINE/SINE | |
SINE | Retro | SINE | Class I | LINE/SINE | |
Class II (DNA transposons) | |||||
TIR | DNA | DNA | Class II | TIR/Crypton/Polinton | |
MITE* | DNA | DNA | Class II | TIR/Crypton/Polinton | |
Crypton | DNA | na | Class II | TIR/Crypton/Polinton | |
Helitron | DNA | na | Class II | Helitron | |
Maverick | DNA | na | Class II | TIR/Crypton/Polinton |
Notes: (*) Non-autonomous element. na: not considered by the tool.