Table 2. Comparison of the performances of PASTEC, REPCLASS, and TECLASS for classification into TE classes.

Dataset (sequence #)	Performance	PASTEC	REPCLASS	TECLASS
Repbase-atha (318)
	Well classified	80.7	83.6	98.4
	Misclassified	0.95	3.5	1.3
	Not classified	18.4	12.9	0.3
Repbase-diff (5546)
	Well classified	63.7	26.1	59.2
	Misclassified	2.9	31.8	40.2
	Not classified	33.4	42.1	0.5
Repbase-all (9665)
	Well classified	52.7	20.35	53.8
	Misclassified	5.9	27.09	45.8
	Not classified	41.3	52.6	0.3