Table 1. Summary characterization of genomes for several datasets: Power-law-like distributions of inter-CNE distances at chromosomal scale.
Dataset | Class of CNEs | Unmasked | Masked | Reference genome | ||
Average Extent (avg E) | Average Extent of five ‘best’ chr. (avg E-5) | Average Extent (avg E) | Average Extent of five ‘best’ chr. (avg E-5) | |||
i | EU100+ | 2 | 2.38 | 2.48 | 2.98 | hg18 |
ia | EU-FR | 1.97 | 2.46 | hg18 | ||
ib | FR | 2.2 | 2.72 | hg18 | ||
ic | XT-FR | 2.32 | 2.32 | hg18 | ||
id | GG-XT-FR | 2.14 | 2.14 | hg18 | ||
ie | EU-GG-XT-FR | 1.96 | 1.96 | hg18 | ||
iia | Mammalian | 1.49 | 1.9 | 1.59 | 2.04 | hg17 |
iib | Amniotic | 2.2 | 2.86 | 2.25 | 2.91 | hg17 |
iii | Human/Chicken | 2.35 | 2.63 | hg19 | ||
iv | Human/Fugu | 2.78 | 3.26 | hg17 | ||
v | Human/Zebrafish | 2.46 | 2.98 | 2.31 | 2.31 | hg17 |
vi | Human/El. shark | 2.36 | 2.69 | 2.42 | 2.68 | hg17 |
vii | D. rerio PCNEs | 2.43 | 3.01 | # | ||
viii | Insect CNEs | 1.23 | 1.23 | 1.42 | 1.42 | dm1 |
ix | Worm CNEs | 1.7 | 1.7 | WS140 | ||
x | Human/Rodents | 2.15 | 2.43 | hg17 |
Propensity for the formation of power-law-like size distributions of the inter-CNE distances as quantified by the extent (E) of linearity in log-log scale. Average values of E for all chromosomes (avg E) and average values of E for 5 chromosomes with the largest E (avg E-5) in each genome are presented. Gene-masked genomes are also included when available (for details see in the text).
#: genome-build Ensembl 42 (zebrafish).