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. 2012 Sep 12;1(2):395–410. doi: 10.3390/biology1020395

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© 2012 by the authors; licensee MDPI, Basel, Switzerland.

This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).

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How TE-Locate makes the callings with read pairs. In this scenario one element of TE1 has vanished from one locus (while the other is retained), one TE2 was inserted, and TE3 has moved to another nearby locus (i.e., cut and paste).