Table 2.
Summary of Single nucleotide polymorphism (SNP) validation.
| SNP Primer Name | Forward Primer | Reverse Primer | SNP score | Validation |
|---|---|---|---|---|
| UQ7A27 | TAACATAAGCAAAGTTCTATTA | TTTGGAACACAATCGGAACTT | 6 | Failed |
| UQ7A1397 | TCTATTGGATTCTTTCCGAT | TCACCCTGTGGAATGAAAGA | 5 | Failed |
| UQ7A5622 | TTAGCCAAAATGGACCCAAA | CCTCTTTATTCAATCTGGAAACG | 2 | True SNP |
| UQ7A129835 | TTCTTACTGTGGCTGCATCA | GCCATCCTAAACGACCTTCA | 5 | True SNP |
| UQ7A9400 | GCCCATATGCAGTTCATGGT | AGAGCCAAACCTTCCCTGAT | 2 | Failed |
| UQ7A7915 | CATGCCAACCCAAGTAGACC | GAAGCGTGAAAATTTCGTGA | 6 | True SNP |
| UQ7A6107 | TGGTGTTTACGCTGAAGTTACC | CTGGCCTGGGCACTACATA | 6 | True SNP |
| UQ7A2603 | GTCACCAACCAGCTCGAAAT | TTGTAGCTTTGCCTCTGTGAA | 2 | Failed |
| UQ7A3491 | AGTCGCCGGCAGTAAAAATA | CCGAAGAAAATGTGGTGGAG | 4 | True SNP |
| UQ7A4532 | TTTCCTCTAGATCTGTGCAAAATG | CATCCAGGACTGCATAAGCTC | 6 | True SNP |
| UQ7A100138 | TCCCTGGTCCACGAGTTATT | AAATGGTTTGAGCCTTGTGC | 7 | Failed |
| UQ7A136305 | CATCATCTTTGAAAAATCCTAGCC | TGTTCTGCAAGCTTCGTCTG | 5 | True SNP |
| UQ7A155877 | AAGCTGTTGTGCCAGTGTTG | GAGCTAGCGTCGCTGACATA | 4 | True SNP |
| UQ7A180868 | GACCGTCATCGAATGTAGCA | TCGTCCACCCAGACCTTATC | 3 | True SNP |
| UQ7A287189 | GGCGATCATCACTTAAGAAACC | CAGTAATGAGGTTTCTGCTTGG | 2 | Failed |
| UQ7A322716 | TCTGTTCGCAAACCAACG | GTGCGTTATCAGGGGAACAT | 11 | True SNP |
| UQ7A57227 | ATGGGTGAAGGGAATACAGC | TGCATGCACATACAACCAAA | 5 | True SNP |
| UQ7A87191 | TCAGTTCGGTAAGGATGAAGA | GAAGCAGTATGCATCTAAACTTTG | 6 | Heterozygous |
| UQ7B21 | GCAGGGTTAATTTCTAGCAAGC | GCCTTTTATCCAAAGCCATC | 8 | Failed |
| UQ7B484 | CTCAACCTCCCAAGCATGA | GCTATCCAGCTACCCTGTGC | 11 | Failed |
| UQ7B3940 | GCCAGAGGCACTAGCATCAC | GGTAATTGTGGAGCAAGCAA | 6 | True SNP |
| UQ7B4960 | GCATGGCATTTCAAGATCAG | GGAGGAGGACAAAGCCAGAT | 5 | True SNP |
| UQ7B5991 | CCAAGCCACCACCCTTTAT | TAATCCCCGTCATCTCGAAG | 4 | True SNP |
| UQ7B120997 | CTCCTCAGATGACCAATTTGC | CACCAAAATATGCTGTACAATTCTATG | 7 | Failed |
| UQ7B256895 | GCAGCAGAGGTAGGCACTTC | GAAATGCTTCGAGTGTGGTG | 11 | True SNP |
| UQ7B64318 | GGGTCCAGACTTCCACGTTA | CCCACATTAATTTGTACGACCTC | 6 | Failed |
| UQ7B97303 | TGATTCGAGCCCATATAGGAA | AGCCATGCGGAAATATTGAG | 8 | True SNP |
| UQ7D283 | TGAGTAAGACAACAATCAGAGCA | CAATGCGAGCAAAAAGATCA | 5 | True SNP |
| UQ7D429 | TGTGCTGACGTGGCATCTAT | GCATGTGGAAAACGAGTGTG | 3 | True SNP |
| UQ7D689 | CATCTGGCCTCAACATCAAA | TGTTGGTAGTGAGGCACTTCTT | 9 | Failed |
| UQ7D948 | GGCGATACTCGATGAAAGAAA | TTGGAAACTACAATTGCACAAC | 9 | True SNP |
| UQ7D1189 | GCGTGGAGTAGAGGGACAAG | TCCAAAAAGCAAAACAAATGC | 4 | True SNP |
| UQ7D1491 | AGCGCAAGGAGGAGGTTAGT | GAGCCAAGTCCTTGTCAATTT | 7 | True SNP |
| UQ7D1846 | AATGTGTTCCATCCAAGACG | GCCAAGGTCGACATGTGATA | 10 | True SNP |
| UQ7D2314 | AAACAAGTCTGTGTTGCGTCA | TGCAGATACATGGCTCCAGA | 2 | Monomorphic |
| UQ7D20375 | CTGCCACCAAACGGATTAAC | AATGCATTGGCAGTCACAAG | 6 | True SNP |
| UQ7D27168 | TAATGCTATGCCGTGTCAGC | GCCACCTATTATTGAAGGCATC | 2 | True SNP |
| UQ7D38754 | GAGCGAGCAATGCTAGTGTG | GAACCCATTTGATAACCGTGA | 3 | Failed |
| UQ7D59683 | CGTCCACATTGTTGCAAATC | TTGACCCTGAAGGAAGGATG | 6 | True SNP |
| UQ7D68910 | TTGCTTTATGCCACTGGAGA | TAGGCCGTGAAACATCAACA | 3 | True SNP |