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. 2012 Jul 26;1(2):222–244. doi: 10.3390/biology1020222

Table 1.

The EFV and NVP bound HIV-1 RT crystal structures analysed by PCA are divided into two groups according to PC1, groups A and B. Group A corresponds to the structures in which p51 flexibility is linked to that of the p66 thumb by ANMs, no such link is observed in ANMs based on group B structures. The drug bound and major resistance associated mutations present in the structure are also listed.

PDB code NNRTI Resolution (Å) Resistance Mutations Citation
Group A: p51 flexible
LW0 NVP 2.80 T215Y Chamberlain et al. [49]
LWC NVP 2.62 M184V Chamberlain et al. [49]
S1U NVP 3.00 L100I Ren et al. [50]
VRT NVP 2.20 Ren et al. [51]
HND NVP 2.50 K101E Ren et al. [52]
HNY NVP 2.50 E138K Ren et al. [52]
FK9 EFV 2.50 Ren et al. [53]
IKV EFV 2.00 K103N Lindberg et al. [7]
IKW EFV 3.00 Lindberg et al. [7]
Group B: p51 constrained
FKP NVP 2.90 K103N Ren et al. [53]
JLB NVP 3.00 Y181C Ren et al. [54]
JLF NVP 2.60 Y188C Ren et al. [54]
LWE NVP 2.81 M41L, T215Y Chamberlain et al. [49]
LWF NVP 2.80 M41L, D67N, K70R, M184V, T215F, K219N Chamberlain et al. [49]
RTH NVP 2.20 Ren et al. [51]
S1X NVP 2.80 V108I Ren et al. [50]
FKO EFV 2.90 K103N Ren et al. [53]
JKH EFV 2.50 Y181C Ren et al. [54]