Table 3.
Comparison | H. annuus-H. debilis | H. annuus-H. petiolaris | H. debilis-H. petiolaris |
---|---|---|---|
Mean FST per gene (13,412 genes) | 0.28 | 0.23 | 0.25 |
Median FST per gene (13,412 genes) | 0.26 | 0.22 | 0.21 |
Coding SNPs (12,310 Open Reading Frames) | |||
Synonymous polymorphic SNPs (Ps) | 147,193 | 162,867 | 174,480 |
Non-synonymous polymorphic SNPs (Pn) | 104,969 | 116,701 | 126,668 |
Synonymous fixed (FST > 0.9) SNPs (Ds) | 3,339 | 2,612 | 865 |
Non-synonymous fixed (FST > 0.9) SNPs (Dn) | 3,581 | 2,935 | 873 |
alpha (proportion of base substitutions fixed by natural selection) and confidence intervals | 0.26 | 0.29 | 0.19 |
[0.22–0.31] | [0.24–0.34] | [0.11–0.29] | |
G-statistic (p-value) * | 239 | 231 | 23 |
(2.2e–16) | (2.2e–16) | (1.4e–6) | |
d N /d S | 0.22 | 0.24 | 0.22 |
* G-test conducted as in [27].