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. 2014 May 1;30(5):484–488. doi: 10.1089/aid.2013.0230

FIG. 3.

FIG. 3.

Bootscan plots and schematic representation of the near full-length genome's mosaic structure. (A) Bootscan plots of GXDY1299 using CRF01_AE, CRF08_BC, and reference strain J as subtype references. The parameters of SimPlot bootscan analysis were set as default except for a window size of 200 and step size of 20. The breakpoint positions refer to HXB2 coordinates located by the HIV Sequence Locator (www.hiv.lanl.gov/content/sequence/LOCATE/locate.html). (B) Genomic map of GXDY1299. The mosaic map was generated using the Recombinant HIV-1 Drawing Tool (www.hiv.lanl.gov/content/sequence/DRAW_ CRF/recom_mapper.html).