Table 1.
Comparison of refinement statistics for the models containing RAGE, DNA, ligands and water molecules reported by Sirois et al. with our refinement of a model only containing RAGE
| RCSB entry | 3S58 | 3S59 |
| Resolution (Å) | 3.1 | 2.8 |
| R/Rfree (%)(Sirois et al., 2013) | 19.1/23.1 | 19.6/23.8 |
| R/Rfree (%) (this study) | 22.0/24.0 | 22.0/23.5 |
| Rmsd bonds (Å)/angles (°) (Sirois et al., 2013) | 0.008/0.975 | 0.007/0.982 |
| Rmsd bonds (Å)/angles (°)(This study) | 0.002/0.673 | 0.002/0.627 |
| Atoms | ||
| Protein/DNA/water/ligands (Sirois et al., 2013) | 3274/896/16/45 | 3267/896/16/59 |
| Protein (this study) | 3274 | 3267 |
R-factor = Σh|Fo|-|Fc|/Σh|Fo|, where Fc is the calculated structure factor scaled to Fo. Rfree is identical to R-factor on a subset of test reflections not used in refinement. Coordinates for the rerefined structures are deposited at the RCSB protein data bank as entries 4OFV and 4OF5.