TABLE 1.
Genomes used in the SearchDOGS species comparison, including model organism E. coli K-12 MG1655a
| Species | GenBank accession no. | Genome size (MB) | No. of protein-coding genes | Acronym |
|---|---|---|---|---|
| Escherichia coli K-12 substrain MG1655 | U00096.2 | 4.6 | 4,145 | ECK1 |
| Escherichia coli O157:H7 strain Sakai | BA000007.2 | 5.6 | 5,361 | ECO1 |
| Escherichia coli S88 | CU928161.2 | 5.2 | 4,696 | ECS8 |
| Shigella boydii Sb227 | CP000036.1 | 4.9 | 4,136 | SBOY |
| Salmonella enterica subsp. enterica serovar Typhi strain Ty2 | AE014613.1 | 4.8 | 4,323 | SETY |
| Yersinia pestis antiqua | CP000308.1 | 4.9 | 4,167 | YPAN |
| Pseudomonas syringae pv. tomato strain DC3000 | AE016853.1 | 6.5 | 5,482 | PSYR |
| Vibrio cholerae O395 | CP000626.1, CP000627.1 | 4.1 | 3,875 | VCHO |
| Xanthomonas campestris pv. campestris strain ATCC 33913 | AE008922.1 | 5.1 | 4,181 | XCAM |
a
All species are from the gammaproteobacterial clade.