TABLE 3.
List of loci at which orthologs of E. coli K-12 MG1655 genes have been annotated in E. coli S88 using the February 2006 annotation of E. coli K-12 MG1655a
| Neighboring genes in E. coli S88 (protein ID) | Length (no. of codons) | E. coli K-12 ortholog name | E. coli K-12 protein product (32) |
|---|---|---|---|
| CAR05156.1 | 253 | yhjH | EAL domain-containing protein involved in flagellar function |
| CAR05160.1 | |||
| CAR03076.1 | 181 | infC | Protein chain initiation factor IF3 |
| CAR03078.1 | |||
| CAR02425.1 | 125 | yceQ | Predicted protein |
| CAR02426.1 | |||
| CAR01639.1 | 110 | ykgJ | Predicted ferredoxin |
| CAR01640.1 | |||
| CAR03844.1 | 92 | ypdI | Predicted lipoprotein involved in colanic acid biosynthesis |
| CAR03845.1 | |||
| CAR03119.1 | 91 | ynjH | Predicted protein |
| CAR03120.1 | |||
| CAR04458.1 | 84 | yqgD | Predicted inner membrane protein |
| CAR04459.1 | |||
| CAR02336.1 | 77 | ymcE | Cold shock gene |
| CAR02337.1 | |||
| CAR02668.1 | 72 | hokD | Qin prophage; small toxic polypeptide |
| CAR02669.1 | |||
| CAR01645.1 | 47 | ykgO | rplJ (L36) paralog |
| CAR01646.1 | |||
| CAR06223.1 | 47 | yjjY | Predicted protein |
| CAR06224.1 | |||
| CAR02507.1 | 47 | ylcG | DLP12 prophage; predicted protein |
| CAR02508.1 | |||
| CAR04903.1 | 38 | rpmJ | 50S ribosomal subunit protein L36 |
| CAR04904.1 | |||
| CAR02096.1 | 38 | ybgT | Conserved protein |
| CAR02097.1 | |||
| Frameshift correction/stop readthrough allowed | |||
| CAR02369.1 | 808 | putP | Proline:sodium symporter |
| CAR02372.1 | |||
| CAR05021.1 | 533 | rtcR | Sigma 54-dependent transcriptional regulator of rtcBA expression |
| CAR05024.1 | |||
| CAR02124.1 | 478 | ybhI | Predicted transporter |
| CAR02127.1 | |||
| CAR03673.1 | 444 | yfaV | Predicted transporter |
| CAR03676.1 | |||
| CAR01981.1 | 387 | ybdL | Methionine aminotransferase, PLP dependent |
| CAR01984.1 | |||
| CAR02773.1 | 351 | ycjQ | Predicted oxidoreductase; Zn dependent and NAD(P) binding |
| CAR02776.1 | |||
| CAR02219.1 | 172 | ybjP | Predicted lipoprotein |
| CAR02222.1 |
a
Cases in which a single frameshift correction/stop codon readthrough produces a full-length gene candidate are also presented. ID, identification number. PLP, pyridoxal phosphate.