TABLE 3.
Factors exhibiting at least a 3-log increase in abundance from chicken cecal samples relative to the input
| Locus | Annotation/predicted functiona | Fitness ratiob |
|---|---|---|
| CJJ81176_0636 | macB macrolide-specific efflux protein | 137,828.30 |
| CJJ81176_1116 | pyrB aspartate carbamoyltransferase catalytic subunit | 113,410.73 |
| CJJ81176_0372 | trpB tryptophan synthase subunit beta | 87,386.48 |
| CJJ81176_0159 | Hypothetical protein | 47,536.15 |
| CJJ81176_1393 | PurB-2 adenylosuccinate lyase | 43,154.53 |
| CJJ81176_0043 | exsB protein ExsB | 34,172.52 |
| CJJ81176_1608 | Hypothetical protein | 30,149.72 |
| CJJ81176_1344 | Hypothetical protein | 27,510.78 |
| CJJ81176_0041 | Membrane protein, putative, degenerate | 27,237.86 |
| CJJ81176_0015 | leuC isopropylmalate isomerase large subunit | 22,670.49 |
| CJJ81176_0190 | Tetrapyrrole methylase family protein | 15,887.70 |
| CJJ81176_0626 | Hypothetical protein | 6,533.57 |
| CJJ81176_1668 | eno phosphopyruvate hydratase | 6,111.82 |
| CJJ81176_1655 | Thiredoxin-like protein | 5,811.00 |
| CJJ81176_1164 | waaF ADP-heptose LPS heptosyltransferase II | 5,388.21 |
| CJJ81176_1008 | Hypothetical protein | 5,142.55 |
| CJJ81176_0437 | Hypothetical protein | 4,427.12 |
| CJJ81176_1325 | Formyl transferase domain-containing protein | 4,020.13 |
| CJJ81176_0738 | Transthyretin-like protein | 3,743.10 |
| CJJ81176_0863 | psd phosphatidylserine decarboxylase | 3,261.48 |
| CJJ81176_1527 | Hypothetical protein | 3,023.00 |
| CJJ81176_0973 | Peptidyl-arginine deiminase family protein | 2,437.90 |
| CJJ81176_0503 | nusG transcription antitermination protein | 2,430.53 |
| CJJ81176_0402 | Hypothetical protein | 1,963.88 |
| CJJ81176_0363 | ydfJ inner membrane metabolite transport protein | 1,635.86 |
| CJJ81176_1552 | nuoM NADH-quinone oxidoreductase, M subunit | 1,633.78 |
| CJJ81176_1553 | nuoL NADH dehydrogenase subunit L | 1,633.78 |
| CJJ81176_0588 | Hypothetical protein | 1,313.33 |
| CJJ81176_1447 | yliG putative tRNA modifying protein | 1,309.45 |
| CJJ81176_1188 | SMR family multidrug efflux pump | 1,244.10 |
| CJJ81176_0815 | Hypothetical protein | 1,242.03 |
| CJJ81176_0072 | Hypothetical protein | 1,216.87 |
| CJJ81176_1270 | Hypothetical protein | 1,142.36 |
| CJJ81176_1521 | galU UTP-glucose-1-phosphate uridylyltransferase | 1,119.73 |
| CJJ81176_1311 | Aminotransferase | 1,098.35 |
| CJJ81176_0163 | Inositol monophosphatase family protein | 1,032.00 |
| CJJ81176_1700 | rpsS 30S ribosomal protein S19 | 1,016.91 |
| CJJ81176_0576 | efp elongation factor P | 1,012.63 |
a
LPS, lipopolysaccharide; SMR, small multidrug resistance.
b
Fitness ratio data were calculated by dividing normalized sequence abundance in output by normalized input abundance