Table 2. Assembly statistics of H. avenae transcriptome generated by Velvet and Oases.
Assembly statistics of H. avenae transcriptome generated by Velvet | ||||
Kmer length | 71 | 75 | 79 | 83 |
Assembled reads | 83346228 | 80457236 | 79060568 | 78113600 |
Total reads | 144868609 | 144868609 | 144868609 | 144868609 |
Percentage assembled | 57.5323 | 55.5381 | 54.574 | 53.9203 |
Total No. of Contigs | 49587 | 42782 | 36482 | 30201 |
Total assembly length (bp) | 22863966 | 21458075 | 19925639 | 18289226 |
Max contig length (bp) | 10420 | 8935 | 9073 | 8997 |
Min contig length (bp) | 141 | 149 | 157 | 165 |
Average sequence length (bp) | 461.088 | 501.568 | 546.177 | 605.583 |
N50 (bp) | 596 | 666 | 748 | 859 |