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. Author manuscript; available in PMC: 2015 Apr 1.
Published in final edited form as: Bioorg Med Chem. 2014 Mar 3;22(7):2149–2156. doi: 10.1016/j.bmc.2014.02.037

Table 1.

Calculated binding free energies (kcal/mol, with standard deviations) for CYP2A6 with inhibitors in comparison with the experimentally-derived binding free energies.

ΔEQM/MM ΔGsolv ΔEbind TΔS
ΔGbindcalc
ΔGbindexpt
a
Nic2a -54.89 23.06 -31.83 23.18 -8.7±0.4 -8.5
Nic2b -53.89 25.50 -28.39 22.11 -6.3±0.5 -7.2
Nic2c -50.02 23.98 -26.04 20.43 -5.6±0.5 -5.5
Methoxsalen -54.52 27.22 -27.30 19.44 -7.9±0.4 -7.8
a

The experimental binding free energies were calculated from the corresponding experimental Ki values (ref.25) via ΔGbindexpt=RTlnKd=RTlnKi.