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. 2014 Mar 28;12(4):1859–1875. doi: 10.3390/md12041859

Table 1.

The calculated and measured affinities of the studied compounds (see Figure 1) to L. stagnalis acetylcholine-binding protein (AChBP). A—HEPES-bound; B—DHβE-bound and C—α-cobratoxin-bound forms of AChBP respectively; *—only a part of the compound could be docked correctly because of multiple rotatable bonds; **—the binding outside “classical” agonist/competitive antagonist site is predicted; n.d.—not determined (no positive solutions). The measured affinities were obtained as follows: firstly, the respective IC50 values were calculated from inhibition curves (see Figure 2) using ORIGIN 7.5 and then converted into the Kis according to Cheng-Prusoff equation (see Experimental Section) with the mean ± s.e.m. values of duplicate or triplicate measurements for each compound concentration.

Compounds Theoretical calculated Ki values (μM) for interaction with L. stagnalis AChBP Experimental Ki values (μM) at interaction with L. stagnalis AChBP from radioligand assay
A B C
1 * n.d. n.d. 39 28 ± 4
2 * n.d. n.d. 39 130 ± 10
3 0.98 1.7 0.64 ** 2.0 0.83 ± 0.04
4 1.6 0.97 0.75 0.79 ± 0.03
5 2.2 0.46 5.8 1.3 ± 0.1
6 0.05 0.04 0.97 0.55 ± 0.01
7 8.2 0.79 0.50 ** 1.7 >1000
8 33 12 310 540 ± 60
9 0.08 0.47 0.40 27 ± 2
10 170 120 n.d. 320 ** >1000
11 150 83 11 ** 350 >1000
12 1.5 5.3 19 3.0 ± 0.4
13 * 0.53 0.43 0.11 2.5 ± 0.4