Table 5. Resources for analysis, enrichment, ortholog identification, etc. of Drosophila gene lists.

Data/analysis type	Tool	Recommended online entry point(s)	References (PMID)
GO term, publication, domain, pathway, etc. enrichment	Flymine	http://www.flymine.org/	Contrino et al. (2012); Lyne et al. (2007)
	modMine	http://intermine.modencode.org/	Dennis et al. (2003)
	DAVID	http://david.abcc.ncifcrf.gov/
Pathway annotation	PANTHER	http://pantherdb.org/pathway/	Mi et al. (2013); Ogata et al. (1999)
	KEGG	http://www.genome.jp/kegg/
	FlyReactome	http://fly.reactome.org/	Joshi-Tope et al. (2005)
	Reactome	http://www.reactome.org/
Complex enrichment	COMPLEAT	www.flyrnai.org/compleat	Vinayagam et al. (2013a)
Phenotype data	PhenomicDB	http://phenomicdb.de/	Kahraman et al. (2005); McQuilton et al. (2012); St Pierre et al. (2014)
		http://flybase.org/
Cocomplex data	DroID	http://droidb.org/	Yu et al. (2008)
Binary interaction data	DroID	http://droidb.org/	Yu et al. (2008)
Ortholog identification	DIOPT	www.flyrnai.org/diopt	Hu et al. (2011)
Disease-related ortholog identification	DIOPT-DIST	www.flyrnai.org/diopt-dist	Forslund et al. (2011); Hu et al. (2011)
	orthoDisease	http://orthodisease.sbc.su.se	Chien et al. (2002)
	Homophila	http://superfly.ucsd.edu/homophila/
Genetic modifiers of neurodegenerative diseases	NeuroGem	http://chibi.ubc.ca/neurogem/	Na et al. (2013)