k |
Substitution rate. |
Ni |
No. class i individuals. |
|
Average no. gene copies in the population. |
Pr(n) |
Stationary probability that the population is in state n. |
Pr(n′|n) |
Forward transition probability from state n to state n′. |
gi |
Ploidy of a class i individual. |
tij |
Probability that a gene randomly sampled in a class-i individual was transmitted by a class-j individual. |
μij |
Mutation rate at a gene transmitted by a class-j individual to a class-i individual. |
|
Average mutation rate in the stationary demographic regime. |
μe
|
Effective mutation rate. |
μe,0
|
Effective mutation rate in newborns. |
T |
Average generation time (or mean age of the parents of a newborn). |
T(n) |
Average generation time in population state n. |
wij(n′, n) |
Expected no. class-i individuals in a population in state n′ descending from a single class-j individual in population state n. |
fij(n′, n) |
Probability that a gene sampled in a class-i individual when the population is in state n′ is a copy of a gene of a class-j individual given the population was in state n in the parental generation. |
aij(n′, n) |
Probability that a gene sampled in a class-i individual when the population is in state n′ is a copy of a gene of a class-j individual and the population was in state n in the parental generation. |
πi(n) |
Fixation probability of a single mutant residing in a class-i individual. |
|
Average fixation probability of a single mutant. |