Table III. QTLs detected for female- and male-mediated nonrandom mating and seed yield traits.

Associated Marker, Position refers to the marker and calculated position (cM) closest to the QTL peak. CI refers to the 2-LOD confidence interval in cM. Variance refers to the percentage of variance explained by the QTL. Additive Effect indicates the change in trait value associated with Van-0 genotypes at the indicated QTLs. Significant LOD scores were determined by calculating P values associated with the maximal LOD scores obtained by 10,000 permutations of the mapping data. Variance components were estimated by restricted maximum likelihood. Asterisks indicate QTLs that did not have a statistically significant effect on trait values by GLM.

Trait	Chromosome	Associated Marker, Position	CI	LOD	Additive Effect	Variance
						%
qFNRM1	1	SNP29_1, 179.85	163.65–189.85	7.48	−2.65%	3.4
qFNRM2	1	SNP10_1, 42.62	40.62–42.62	4.65	1.10%	1.8*
qFNRM3	5	SNP136_5, 45.27	34.77–54.22	4.11	2.98%	7.2
qFNRM4	2	SNP71_2, 197.63	181.45–205.13	4.00	−2.46%	3.5
Epistasis		qFNRM2*qFNRM3			−2.55%	3.3
qFSY4	1	SNP12_1, 56.37	55.87–56.37	10.04	−2.56 seeds	9.30
qFSY5	5	SNP144_5, 111.13	111.13–112.63	9.55	3.24 seeds	15.20
qFSY6	1	SNP43_1, 243.48	236.26–245.48	5.66	−3.77 seeds	21.80
qFSY7	5	SNP140_5, 75.53	66.12–82.03	5.06	−3.04 seeds	12.80
qFSY8	2	SNP71_2, 201.13	192.13–206.13	4.07	−1.49*
qMNRM3	1	SNP26_1, 163.65	161.96–166.65	10.84	−4.62%	12.0
qMNRM4	1	SNP24_1, 156.63	149.63–168.65	8.14	−0.83%	2.35
qMNRM5	1	SNP17_1, 88.96	84.28–93.96	5.89	2.57%	2.51*
qMNRM6	1	SNP22_1, 110.69	102.59–124.69	4.21	−2.64%	2.70*
Epistasis		qMNRM3*qMNRM4			2.40%	5.0
qMSY2	1	SNP20_1, 103.59	102.59–108.59	5.32	2.22 seeds	11.90
qMSY3	3	SNP84_3, 72.79	63.77–79.29	4.91	1.43 seeds	6.80
qMSY4	1	SNP16_1, 87.28	78.11–91.96	4.22	−2.02 seeds	9.10