Table I. Top 30 genes up-regulated upon NodC OE.
Values are ratios (NodC OE-wild type) of log2 values.
| No. | Arabidopsis Genome Initiative Code | Probe Identifier | pTGK42-10 | P | pTGK42-28 | P | Name/Putative Function |
|---|---|---|---|---|---|---|---|
| 1 | AT4G02330 | A_84_P21341 | 4.34 | 3.86E-08 | 4.23 | 3.80E-08 | Plant invertase/pectin methylesterase inhibitor superfamily |
| 2 | AT5G39720 | A_84_P23470 | 4.25 | 6.22E-05 | 4.09 | 6.74E-05 | Avirulence-induced gene2-like protein |
| 3 | AT1G65845 | A_84_P586318 | 3.99 | 6.48E-08 | 3.94 | 6.34E-08 | Unknown protein |
| 4 | AT3G54830 | A_84_P522715 | 3.92 | 1.23E-05 | 4.58 | 3.84E-06 | Transmembrane amino acid transporter family protein |
| 5 | AT1G65240 | A_84_P21818 | 3.91 | 1.06E-06 | 3.84 | 1.05E-06 | Eukaryotic aspartyl protease family protein |
| 6 | AT1G30720 | A_84_P18030 | 3.90 | 9.67E-05 | 4.08 | 6.11E-05 | FAD-binding Berberine family protein |
| 7 | AT5G64110 | A_84_P15996 | 3.90 | 4.48E-05 | 4.11 | 2.68E-05 | Peroxidase superfamily protein |
| 8 | AT2G34820 | A_84_P530502 | 3.86 | 9.10E-05 | 3.38 | 1.84E-04 | Basic helix-loop-helix DNA-binding superfamily protein |
| 9 | AT1G16530 | A_84_P506289 | 3.83 | 1.89E-07 | 4.09 | 1.13E-07 | ASYMMETRIC LEAVES2-like9 |
| 10 | AT1G65510 | A_84_P539238 | 3.78 | 4.98E-09 | 3.62 | 7.40E-09 | Unknown protein |
| 11 | AT4G23310 | A_84_P10997 | 3.77 | 3.08E-07 | 3.52 | 4.17E-07 | Cys-rich RLK23 |
| 12 | AT5G06300 | A_84_P22450 | 3.71 | 9.97E-06 | 3.45 | 1.38E-05 | Putative Lys decarboxylase family protein |
| 13 | AT2G29110 | A_84_P10728 | 3.68 | 1.32E-07 | 3.36 | 2.08E-07 | Glu receptor2.8 |
| 14 | AT1G58225 | A_84_P544532 | 3.62 | 2.34E-06 | 3.49 | 2.68E-06 | Unknown protein |
| 15 | AT1G51860 | A_84_P20996 | 3.48 | 4.20E-08 | 3.19 | 5.90E-08 | Leu-rich repeat protein kinase family protein |
| 16 | AT1G49500 | A_84_P53790 | 3.48 | 1.12E-06 | 4.56 | 1.99E-07 | Unknown protein |
| 17 | AT1G07610 | A_84_P148418 | 3.42 | 4.63E-09 | 3.70 | 4.61E-09 | Metallothionein 1C |
| 18 | AT1G66870 | A_84_P141619 | 3.40 | 6.43E-06 | 3.70 | 3.33E-06 | Carbohydrate-binding X8 domain superfamily protein |
| 19 | AT1G60970 | A_84_P20922 | 3.38 | 1.41E-07 | 3.32 | 1.48E-07 | SNARE-like superfamily protein |
| 20 | AT1G65490 | A_84_P57860 | 3.37 | 6.79E-07 | 3.28 | 7.06E-07 | Unknown protein |
| 21 | AT5G39580 | A_84_P16848 | 3.31 | 2.34E-07 | 3.26 | 2.33E-07 | Peroxidase superfamily protein |
| 22 | AT1G03020 | A_84_P19925 | 3.29 | 1.29E-05 | 3.86 | 3.99E-06 | Thioredoxin superfamily protein |
| 23 | AT5G64120 | A_84_P16942 | 3.29 | 2.78E-09 | 3.23 | 1.67E-09 | Peroxidase superfamily protein |
| 24 | AT1G66460 | A_84_P730499 | 3.20 | 1.38E-04 | 3.37 | 8.49E-05 | Protein kinase superfamily protein |
| 25 | AT2G05330 | A_84_P586382 | 3.20 | 4.73E-06 | 3.07 | 5.32E-06 | BTB/POZ domain-containing protein |
| 26 | AT2G25470 | A_84_P18293 | 3.19 | 3.12E-04 | 3.31 | 2.09E-04 | Receptor like protein21 |
| 27 | AT5G02760 | A_84_P17710 | 3.17 | 3.20E-08 | 2.81 | 5.00E-08 | Protein phosphatase2C family protein |
| 28 | AT4G18280 | A_84_P11922 | 3.16 | 1.07E-08 | 3.02 | 1.48E-08 | Gly-rich cell wall protein-related |
| 29 | AT5G50915 | A_84_P528334 | 3.15 | 5.45E-08 | 3.46 | 3.59E-08 | Basic helix-loop-helix DNA-binding superfamily protein |
| 30 | AT1G72060 | A_84_P51580 | 3.07 | 4.26E-05 | 3.41 | 1.803-05 | Ser-type endopeptidase inhibitors |