Table II. Top 30 genes down-regulated upon NodC OE.
Values are ratios (NodC OE-wild type) of log2 values.
| No. | Arabidopsis Genome Initiative Code | Probe Identifier | pTGK42-10 | P | pTGK42-28 | P | Name/Putative Function |
|---|---|---|---|---|---|---|---|
| 1 | AT4G15390 | A_84_P22420 | −4.31 | 5.55E-05 | −3.39 | 1.93E-04 | HXXXD-type acyltransferase family protein |
| 2 | AT1G52690 | A_84_P14274 | −3.55 | 5.91E-06 | −3.32 | 7.95E-06 | Late embryogenesis abundant protein family protein |
| 3 | AT1G43160 | A_84_P16121 | −3.35 | 2.17E-04 | −3.09 | 3.03E-04 | Related to AP2 6 |
| 4 | AT3G02480 | A_84_P18335 | −2.92 | 8.29E-07 | −2.77 | 1.02E-06 | Late embryogenesis abundant protein family protein |
| 5 | AT1G74080 | A_84_P20939 | −2.89 | 1.74E-05 | −3.53 | 4.13E-06 | Myb domain protein122 |
| 6 | AT1G59950 | A_84_P15199 | −2.86 | 2.90E-05 | −3.39 | 7.90E-06 | NAD(P)-linked oxidoreductase superfamily protein |
| 7 | AT3G50300 | A_84_P504952 | −2.83 | 7.52E-05 | −2.38 | 1.59E-04 | HXXXD-type acyltransferase family protein |
| 8 | AT1G15125 | A_84_P106016 | −2.81 | 3.45E-07 | −2.72 | 3.74E-07 | S-Adenosyl-l-Met-dependent methyltransferases |
| 9 | AT5G38910 | A_84_P17792 | −2.61 | 1.54E-03 | −1.16 | 4.96E-02 | RmlC-like cupins superfamily protein |
| 10 | AT3G04290 | A_84_P11715 | −2.54 | 1.50E-08 | −2.13 | 3.48E-08 | Li-tolerant lipase1 |
| 11 | AT4G06746 | A_84_P530732 | −2.41 | 8.94E-09 | −1.95 | 2.79E-08 | Related to AP2 9 |
| 12 | AT4G15270 | A_84_P12017 | −2.36 | 4.69E-07 | −2.16 | 6.89E-07 | Glucosyltransferase-related |
| 13 | AT4G11760 | A_84_P21368 | −2.34 | 4.46E-05 | −1.69 | 3.19E-04 | Low-molecular-weight Cys-rich17 |
| 14 | AT1G10990 | A_84_P291354 | −2.32 | 7.29E-05 | −2.18 | 9.30E-05 | Unknown protein |
| 15 | AT4G00910 | A_84_P94999 | −2.28 | 4.11E-05 | −2.33 | 3.00E-05 | Aluminum-activated malate transporter family protein |
| 16 | AT1G62760 | A_84_P18892 | −2.19 | 3.73E-07 | −2.49 | 1.56E-07 | Plant invertase/pectin methylesterase inhibitor |
| 17 | AT3G04720 | A_84_P23050 | −2.17 | 9.54E-07 | −1.16 | 4.72E-05 | Pathogenesis-related4 |
| 18 | AT5G13330 | A_84_P14906 | −2.16 | 5.01E-06 | −2.27 | 3.27E-06 | Related to AP2 6l |
| 19 | AT4G16260 | A_84_P17693 | −2.01 | 6.05E-08 | −1.55 | 2.45E-07 | Glycosyl hydrolase superfamily protein |
| 20 | AT3G56700 | A_84_P13765 | −1.99 | 3.54E-04 | −1.43 | 2.34E-03 | Fatty acid reductase6 |
| 21 | AT1G27020 | A_84_P10039 | −1.96 | 1.90E-08 | −1.82 | 2.82E-08 | Unknown protein |
| 22 | AT3G15270 | A_84_P167633 | −1.95 | 2.16E-07 | −1.84 | 2.78E-07 | Squamosa promoter-binding protein-like5 |
| 23 | AT2G45180 | A_84_P272390 | −1.95 | 8.77E-07 | −1.44 | 5.10E-06 | Lipid-transfer protein/seed storage2S albumin |
| 24 | AT2G26400 | A_84_P563250 | −1.93 | 5.36E-07 | −1.74 | 9.01E-07 | Acireductone dioxygenase3 |
| 25 | AT3G05690 | A_84_P20208 | −1.90 | 4.80E-06 | −1.87 | 4.63E-06 | Nuclear factor Y subunit A2 |
| 26 | AT5G25980 | A_84_P12100 | −1.88 | 1.14E-05 | −1.93 | 8.30E-06 | Glucoside glucohydrolase2 |
| 27 | AT2G14535 | A_84_P732168 | −1.87 | 1.02E-03 | −1.35 | 6.02E-03 | Transposable element gene |
| 28 | AT1G53700 | A_84_P10747 | −1.82 | 1.19E-06 | −1.62 | 2.23E-06 | WAG1 |
| 29 | AT1G06340 | A_84_P554127 | −1.80 | 2.22E-04 | −2.33 | 3.62E-05 | Plant Tudor-like protein |
| 30 | AT2G26560 | A_84_P21049 | −1.80 | 7.71E-07 | −1.84 | 5.82E-07 | Phospholipase A 2A |