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. 2014 May;20(5):772–782. doi: 10.3201/eid2005.131298

Table 4. Primers and reaction conditions for GAPDH gene amplifications used to verify quality of BLV DNA extracted from human breast tissue samples, human cell lines, and animal cell lines*.

Gene Primer pair sequences, 5′ → 3′† Location in bp‡ Product length, bp Annealing temperature, °C§ Extension time, s§
Human GAPDH F: GAGTCAACGGATTTGGTCGT 194–213 237 50 22
R: TTGATTTTGGAGGGATCTCG 431–412
Mouse GAPDH F: AGCTTGTCATCAACGGGAAG 246–265 796 58 60
R: ATGTAGGCCATGAGGTCCAC 1041–1022
Bovine GAPDH F: CCTTCATTGACCTTCACTACATGGTCTA 172–199 857 59 60
R: GCTGTAGCCAAATTCATTGTCGTACCA 1028–1002

*GAPDH, glyceraldehyde-3-phosphate dehydrogenase; BLV, bovine leukemia virus; F, forward primer; R, reverse primer.
†Reverse sequences are reversed and complementary to the published genomic sequences. Primers were synthesized by Operon Biotechnologies, Huntsville, AL, USA.
‡Sequence bp numbering according to GenBank no. NM 002046.4 (human), XM 001476707.3 (mouse), and NM 001034034.2 (bovine). 
§Cycling conditions were 1 cycle at 95°C for 2 min; 35 cycles at 95°C for 30 s; XX°C for 30 s, 72°C for XX sec; and 1 cycle at 72°C for 5 min, where XX represents annealing temperature and extension times, respectively, for primer pairs.