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Relative abundance estimations in simulated pools with five individuals using 230,000 SNPs. (a) Assuming all five genotypes are known. (b) Assuming one of the indviduals' genotypes is missing. The methods compared are: eALPS, full genotypic data; eALPS-LD, missing genotype and utilizing LD; eALPS-MIS, missing genotype and full (soft) EM. SNP, single-nucleotide polymorphism; LD, linkage disequilibrium; EM, expectation-maximization.
