Skip to main content
. 2014 Apr 30;70(Pt 5):1321–1335. doi: 10.1107/S1399004714002739

Table 2. Structurally equivalent active-site residues classified by (putative) function in SGSH and closely homologous sulfatases with known atomic structures.

ASA, arylsulfatase A (also known as human lysosomal cerebroside-3-sulfate 3-sulfohydrolase; Lukatela et al., 1998); ASB, arylsulfatase B (human lysosomal N-acetylgalactosamine-4-sulfate 4-sulfohydrolase (Bond et al., 1997); PAS, arylsulfatase from P. aeruginosa (Boltes et al., 2001); ES, human oestrone/dehydroepiandrosterone sulfatase (Hernandez-Guzman et al., 2003); GALNS, human lysosomal (N-acetyl)galactosamine-6-sulfatase (Rivera-Coln et al., 2012); BcPMH, sulfatase/hydrolase from B. caryophylli PG2952 (van Loo et al., 2010). Sequence identities were calculated for protein sequences using the PROMALS3D server (Pei et al., 2008) and ClustalW2 (BcPMH; Goujon et al., 2010). R.m.s.d.s were calculated using Coot. Lys123 (SGSH numbering) and its equivalent residues in homologues also participate in sulfate binding.

Enzyme SGSH PAS ASA ASB GALNS ES BcPMH
PDB code 4mhx 1hdh 1auk 1fsu 4fdi 1p49 2w8s
Sequence identity (%) 100 22.4 22.2 19.7 22.8 19.1 24.6
R.m.s.d. () (No. of residues) 0.00 (482) 2.17 (341) 2.21 (331) 2.18 (312) 1.97 (336) 1.95 (303) 1.98 (345)
Desulfation FGly70 FGly51 FGly69 FGly91 FGly79 FGly75 FGly57
Metal Ca2+ Ca2+ Mg2+ (Ca2+) Ca2+ Ca2+ Ca2+ Fe
Metal binding Asp31 Asp13 Asp29 Asp53 Asp39 Asp35 Asp12
Asp32 Asp14 Asp30 Asp54 Asp40 Asp36  
Asp273 Asp317 Asp281 Asp300 Asp288 Asp342 Asp324
Asn274 Asn318 Asn282 Asn301 Asn289 Gln343 His325
FGly binding Arg74 Arg55 Arg73 Arg95 Arg83 Arg79 Arg61
Lys123 Lys113 Lys123 Lys145 Lys140 Lys134 Tyr105
His125 His115 His125 His147 His142 His136 Thr107
Sulfate binding His181 His211 His229 His242 His236 His290 His218
Arg282 Lys375 Lys302 Lys318 Lys310 Lys368 Lys337

The identity of the divalent cation was later demonstrated to be Ca2+ in ASA structures with PDB codes 1n2k and 1n2l (Chruszcz et al., 2003).