Table 2. Structurally equivalent active-site residues classified by (putative) function in SGSH and closely homologous sulfatases with known atomic structures.
ASA, arylsulfatase A (also known as human lysosomal cerebroside-3-sulfate 3-sulfohydrolase; Lukatela et al., 1998 ▶); ASB, arylsulfatase B (human lysosomal N-acetylgalactosamine-4-sulfate 4-sulfohydrolase (Bond et al., 1997 ▶); PAS, arylsulfatase from P. aeruginosa (Boltes et al., 2001 ▶); ES, human oestrone/dehydroepiandrosterone sulfatase (Hernandez-Guzman et al., 2003 ▶); GALNS, human lysosomal (N-acetyl)galactosamine-6-sulfatase (Rivera-Coln et al., 2012 ▶); BcPMH, sulfatase/hydrolase from B. caryophylli PG2952 (van Loo et al., 2010 ▶). Sequence identities were calculated for protein sequences using the PROMALS3D server (Pei et al., 2008 ▶) and ClustalW2 (BcPMH; Goujon et al., 2010 ▶). R.m.s.d.s were calculated using Coot. Lys123 (SGSH numbering) and its equivalent residues in homologues also participate in sulfate binding.
| Enzyme | SGSH | PAS | ASA | ASB | GALNS | ES | BcPMH |
|---|---|---|---|---|---|---|---|
| PDB code | 4mhx | 1hdh | 1auk | 1fsu | 4fdi | 1p49 | 2w8s |
| Sequence identity (%) | 100 | 22.4 | 22.2 | 19.7 | 22.8 | 19.1 | 24.6 |
| R.m.s.d. () (No. of residues) | 0.00 (482) | 2.17 (341) | 2.21 (331) | 2.18 (312) | 1.97 (336) | 1.95 (303) | 1.98 (345) |
| Desulfation | FGly70 | FGly51 | FGly69 | FGly91 | FGly79 | FGly75 | FGly57 |
| Metal | Ca2+ | Ca2+ | Mg2+ (Ca2+)† | Ca2+ | Ca2+ | Ca2+ | Fe |
| Metal binding | Asp31 | Asp13 | Asp29 | Asp53 | Asp39 | Asp35 | Asp12 |
| Asp32 | Asp14 | Asp30 | Asp54 | Asp40 | Asp36 | ||
| Asp273 | Asp317 | Asp281 | Asp300 | Asp288 | Asp342 | Asp324 | |
| Asn274 | Asn318 | Asn282 | Asn301 | Asn289 | Gln343 | His325 | |
| FGly binding | Arg74 | Arg55 | Arg73 | Arg95 | Arg83 | Arg79 | Arg61 |
| Lys123 | Lys113 | Lys123 | Lys145 | Lys140 | Lys134 | Tyr105 | |
| His125 | His115 | His125 | His147 | His142 | His136 | Thr107 | |
| Sulfate binding | His181 | His211 | His229 | His242 | His236 | His290 | His218 |
| Arg282 | Lys375 | Lys302 | Lys318 | Lys310 | Lys368 | Lys337 |