Table 4. Test statistics for deviation from neutral expectations for the photoperiod pathway related genes.
Locus | Tajima's D | Fay & Wu's Ha | Fay & Wu's Hb | K value from mlHKA |
PaPhyN-rI | −1.27 | −1.892 | 0.55 | 1.49 |
PaPhyN-rII | −1.28 | 0.16 | NA | 0.44 |
PaPhyO | −1.16 | −9.351 , 2 , 3 | 0.21 | 0.92 |
PaPhyP-rI | 0.04 | 0.40 | −0.30 | 0.82 |
PaPhyP-rII | −1.18 | 0.36 | −1.422 , 3 | 2.42 |
PaCry | −0.93 | −2.922 , 3 | −4.881 , 2 , 3 | 0.36 |
PaPAT1 | 0.35 | −0.72 | 0.56 | 0.65 |
PaZTL | −1.19 | −2.722 | 3.60 | 4.60 |
PaGI | −1.00 | 0.66 | 0.78 | 0.90 |
PaPRR1 | −0.09 | 0.71 | NA | 1.37 |
PaPRR3 | 1.441 , 2 , 3 | −0.58 | −0.85 | 0.75 |
PaPRR7 | −1.491 | −1.02 | −0.29 | 1.29 |
PaCol1 | −1.571 | −13.261 , 2 , 3 | −3.38 | 1.53 |
PaCol2 | −1.37 | 0.31 | −2.972 | 1.73 |
PaEBS | −1.671 | −9.031 , 2 , 3 | −2.612 , 3 | 1.35 |
PaFTL1 | −1.361 | NA | NA | NA |
PaFTL2 | −0.40 | −5.731 , 2 , 3 | NA | 0.63 |
PaMFT1 | −0.87 | NA | NA | NA |
PaMFT2 | −1.21 | NA | NA | NA |
With Pinus taeda as outgroup
With Picea species as outgroup
Observed value in the 5% lower or 95% upper quantile for SNM.
Observed value in the 5% lower or 95% upper quantile for PEM.
Observed value in the 5% lower or 95% upper quantile for SPM.