Table 1. Data collection, refinement and model building statistics of mLTC4S in complex with sulfate (apo-form), GSH and S-hexyl GSH.
Data set | SO4 2− (Apo-form) | GSH | S-hexyl GSH | ||
Data collection | |||||
Wavelength (Å) | 0.96863 | 0.93990 | 0.93928 | ||
Resolution range (Å) | 42.39–2.7 (2.85–2.7) | 28.2–2.7 (2.85–2.7) | 48.82–2.65(2.79–2.65) | ||
Unit-cell parameters (Å,°) | a = b = c = 169.6, α = β = γ = 90 | a = b = c = 169.3, α = β = γ = 90 | a = b = c = 169.1 α = β = γ = 90 | ||
Space group | F23 | F23 | F23 | ||
Observed reflections | 46866 | 143931 | 158139 | ||
Unique reflections | 17347 | 27094 | 19576 | ||
Completeness (%) | 99.5 (99.0) | 100 (100) | 100 (100) | ||
<I/σ(I)> | 14.0 (0.9) | 21.3 (0.6) | 24.7 (0.5) | ||
R merge a (%) | 4.6 (82) | 7.9 (129) | 6.0 (157) | ||
Average multiplicity | 3.3 | 11.1 | 10.9 | ||
Wilson B-factor (Å2) | 78.62 | 68.64 | 74.7 | ||
Refinement | |||||
Reflections used in working set | 11160 | 11164 | 11766 | ||
Reflections used in test set | 558 | 558 | 584 | ||
Maximum resolution (Å) | 2.7 | 2.7 | 2.65 | ||
Rwork b/Rfree c (%) | 23/26 | 21.3/24 | 21.7/24.5 | ||
No. of protein atoms | 1181 | 1172 | 1157 | ||
No. of ligand atoms, ions | 49 | 54 | 72 | ||
Average B-factor (Å2) | 83.59 | 77.76 | 82.93 | ||
R.m.s.d. from ideal | |||||
Bond lengths (Å) | 0.010 | 0.010 | 0.010 | ||
Bond angles (°) | 1.284 | 1.278 | 1.367 | ||
Ramachandran statistcs of φ/ψ angels d (%) | |||||
Preferred regions | 91.78 | 95.17 | 95.8 | ||
Allowed regions | 7.56 | 6.78 | 8.62 | ||
Outliers | 1.37 | 1.38 | 1.4 | ||
PDB ID | 4NTA | 4NTB | 4NTF |
R merge = ∑hkl∑i|Ii(hkl) – <I(hkl)>|/∑hkl∑i|Ii(hkl)|, where Ii(hkl) is the intensity of the ith measurement of reflection hkl and <I(hkl)> is the average intensity of this reflection.
R = ∑ ||Fobs|–|Fcalc||/∑ |Fobs|.
Rfree [38] was monitored with 5% of the reflection data excluded from refinement.
as determined by MolProbity.
Values for the highest resolution shell are given in parentheses.